UCcg10297_89, UCcg10297_89 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10297_89
AliasUCcg10297_89
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceACCTAAAATGAAAATTGCTTAACAGCAAAA
3' Flanking SequenceCAAGTAAATTTCGGGATTAAAAGTTACTCA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 2cg10297_R: AAGGTTCAAAATCGACGGTG
Primer 3cg10297_F: ACAATGGAGGCAGCAAGAAC
Primer 4cg10297_R: AAGGTTCAAAATCGACGGTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018209.1chromosomeCM018209.1:117151240..117151300 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_08chromosomeD5_08:59913563..59913623 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:127436372..127436432 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_08chromosomeD10_08:1477331..1477391 +Gossypium turneri (D10) genome NSF_v1_a2
CM016621.1chromosomeCM016621.1:2416808..2416868 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr5chromosomeDt_chr5:13271394..13271454 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold5681supercontigscaffold5681:4098..4158 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A08chromosomeGhir_A08:120680275..120680335 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A08chromosomeA08:123225053..123225113 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A08chromosomeA08:123589711..123589771 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A08chromosomeA08:119263050..119263110 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A08chromosomeGbar_A08:117827904..117827964 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A08chromosomeA08:118778831..118778891 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017617.1chromosomeCM017617.1:117352457..117352517 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017643.1chromosomeCM017643.1:127117500..127117560 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017695.1chromosomeCM017695.1:118073312..118073372 -Gossypium darwinii (AD5) genome HGS_v1.1
A08chromosomeA08:125509120..125509180 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:130047537..130047597 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr08chromosomeChr08:130857640..130857700 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr08chromosomeChr08:60818732..60818792 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr04chromosomeChr04:62477540..62477600 -Gossypium thurberi (D1-5) genome CRI_v1
Chr04chromosomeChr04:64673880..64673940 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr04chromosomeChr04:41641304..41641364 -Gossypium aridum (D4) genome ISU_v1
Chr04chromosomeChr04:35168657..35168717 -Gossypium gossypioides (D6) genome ISU_v1
Chr04chromosomeChr04:42890901..42890960 -Gossypium lobatum (D7) genome ISU_v1
F08chromosomeF08:102852542..102852602 -Gossypium longicalyx (F1) genome NSF_v1
Chr08chromosomeChr08:2335465..2335525 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr04chromosomeUCD_cg10297_89:1..61 .
Chr04:60393838..60393898 -
Sequence
>UCD_cg10297_89 ID=UCD_cg10297_89; Name=UCD_cg10297_89; organism=Gossypium spp.; type=genetic_marker; length=65bp
ACCTAAAATGAAAATTGCTTAACAGCAAAA[A/G]CAAGTAAATTTCGGG
ATTAAAAGTTACTCA