UCcg10265_664, UCcg10265_664 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10265_664
AliasUCcg10265_664
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
5' Flanking SequenceGCTAAGTGTTAATTTATGCTTTATTTTAGT
3' Flanking SequenceCCATTAGTATTTATGTTTTTAAGATTGTTG
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10265_F: TCAAGACTGTTTGGCAGGTG
Primer 2cg10265_R: TCCAACAAAAGGCTAACGCT
Primer 3cg10265_F: TCAAGACTGTTTGGCAGGTG
Primer 4cg10265_R: TCCAACAAAAGGCTAACGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:101861949..101862009 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:110867894..110867954 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold294.1supercontigscaffold294.1:424643..424703 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:87555170..87555230 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:105670465..105670525 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:108780731..108780791 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:108486425..108486485 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:104540393..104540453 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:102462087..102462147 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:103713608..103713668 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:102112687..102112747 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:111666899..111666959 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:102729264..102729324 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:110327767..110327827 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:113802097..113802157 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:114782481..114782541 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:27868123..27868183 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:146998700..146998760 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>UCD_cg10265_664 ID=UCD_cg10265_664; Name=UCD_cg10265_664; organism=Gossypium spp.; type=genetic_marker; length=65bp
GCTAAGTGTTAATTTATGCTTTATTTTAGT[A/C]CCATTAGTATTTATG
TTTTTAAGATTGTTG