UCcg10259_208, UCcg10259_208 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10259_208
AliasUCcg10259_208
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceACTAACTCCTCCTTATCCCCCGTCAATTCT
3' Flanking SequenceACCCCTAATTTTCCTCTCAAAAGAACCCAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10259_F: ATTTTCCCAGCAGACAAACG
Primer 2cg10259_R: GATTCCTACAAGGCCGATCA
Primer 3cg10259_F: ATTTTCCCAGCAGACAAACG
Primer 4cg10259_R: GATTCCTACAAGGCCGATCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:11179342..11179402 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:13280333..13280393 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:10767632..10767692 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:14918348..14918408 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:51407661..51407721 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr4chromosomeAt_chr4:81782992..81783052 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr4chromosomeDt_chr4:20956453..20956513 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:11150064..11150124 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:13086687..13086747 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:11180402..11180462 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:13637718..13637778 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:10778283..10778343 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:13360147..13360207 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:10625887..10625947 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:13747406..13747466 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:11264360..11264420 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:13543854..13543914 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:11308353..11308413 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:13678985..13679045 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:11378412..11378472 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:13348148..13348208 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:11388819..11388879 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:13798221..13798281 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:11781049..11781109 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:14265649..14265709 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:11228499..11228559 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:13532326..13532386 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:11337132..11337192 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:14220520..14220580 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:14751820..14751880 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:14971962..14972022 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:10601823..10601883 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:15053379..15053439 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:11211303..11211363 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:9533254..9533314 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:8747569..8747629 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:8626851..8626911 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:7159551..7159611 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:8534762..8534822 -Gossypium lobatum (D7) genome ISU_v1n/a
F08chromosomeF08:12318031..12318091 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeUCD_cg10259_208:1..61 .
Chr04:10654580..10654640 -		n/a
Sequence
>UCD_cg10259_208 ID=UCD_cg10259_208; Name=UCD_cg10259_208; organism=Gossypium spp.; type=genetic_marker; length=65bp
ACTAACTCCTCCTTATCCCCCGTCAATTCT[A/T]ACCCCTAATTTTCCT
CTCAAAAGAACCCAA