UCcg10247_485, UCcg10247_485 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10247_485
AliasUCcg10247_485
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
5' Flanking SequenceTGGACGATTGGGTGCTGTGCCGGATTTACA
3' Flanking SequenceTAAGAAAGGTTGCATCGAAAAACAACCAAC
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10247_F: TCTGGGTACTGGAAGGCAAC
Primer 2cg10247_R: TGTCCCAATATCCGGCTTAC
Primer 3cg10247_F: TCTGGGTACTGGAAGGCAAC
Primer 4cg10247_R: TGTCCCAATATCCGGCTTAC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:13746230..13746290 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:15441444..15441504 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:53217247..53217307 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr3chromosomeAt_chr3:86318040..86318100 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:13952449..13952509 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:13976640..13976700 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:13417817..13417877 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:14094429..14094489 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:14145359..14145419 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:13833090..13833150 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:13776383..13776443 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:13922435..13922495 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:14295333..14295393 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:13999195..13999255 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:14222339..14222399 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:116655590..116655650 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:115472353..115472413 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:92169276..92169336 -Gossypium anomalum (B1) genome NSF_v1n/a
chr05chromosomechr05:9649570..9649630 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:9016234..9016294 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:12683763..12683823 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:9078264..9078324 +Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:10307300..10307360 +Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:17736262..17736322 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:13746332..13746392 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>UCD_cg10247_485 ID=UCD_cg10247_485; Name=UCD_cg10247_485; organism=Gossypium spp.; type=genetic_marker; length=65bp
TGGACGATTGGGTGCTGTGCCGGATTTACA[A/C]TAAGAAAGGTTGCAT
CGAAAAACAACCAAC