UCcg10247_349, UCcg10247_349 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10247_349
AliasUCcg10247_349
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAAAGAAAACGCTGTTCGTACACAGTGTGGT
3' Flanking SequenceCAGCAACATACAAAAGCAGACCAAACAATT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10247_F: TCTGGGTACTGGAAGGCAAC
Primer 2cg10247_R: TGTCCCAATATCCGGCTTAC
Primer 3cg10247_F: TCTGGGTACTGGAAGGCAAC
Primer 4cg10247_R: TGTCCCAATATCCGGCTTAC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:13746094..13746154 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:15441308..15441368 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr5chromosomeDt_chr5:48561644..48561704 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr3chromosomeAt_chr3:86318176..86318236 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:12909930..12909990 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:13952313..13952373 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:13976504..13976564 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:12270335..12270395 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:13417681..13417741 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:14094293..14094353 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:12724976..12725036 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:14145223..14145283 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:13832954..13833014 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:12105291..12105351 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:13776247..13776307 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:12651471..12651531 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:13922299..13922359 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:14295197..14295257 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:12481282..12481342 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:13999059..13999119 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:13055791..13055851 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:14222203..14222263 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:116655726..116655786 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:115472489..115472549 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:12683626..12683686 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:7397017..7397077 +Gossypium gossypioides (D6) genome ISU_v1n/a
F03chromosomeF03:13746194..13746254 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>UCD_cg10247_349 ID=UCD_cg10247_349; Name=UCD_cg10247_349; organism=Gossypium spp.; type=genetic_marker; length=65bp
AAAGAAAACGCTGTTCGTACACAGTGTGGT[C/T]CAGCAACATACAAAA
GCAGACCAAACAATT