UCcg10246_216, UCcg10246_216 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10246_216
AliasUCcg10246_216
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
5' Flanking SequenceCAATAGACTCCCACCCTCTGCCGCTTATCG
3' Flanking SequenceGGTGGTCCCTGTTTCCATGCGGCCTCTACC
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10246_F: TCCCTTTGATTTCCTGCCTA
Primer 2cg10246_R: CCGTCGTCGTCTATTTGGTT
Primer 3cg10246_F: TCCCTTTGATTTCCTGCCTA
Primer 4cg10246_R: CCGTCGTCGTCTATTTGGTT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:109302363..109302423 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:118874217..118874277 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold149.1supercontigscaffold149.1:793146..793206 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:94661297..94661357 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:112528183..112528243 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:115440538..115440598 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:115343993..115344053 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:111251483..111251543 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:109980126..109980186 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:111069028..111069088 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:109506919..109506979 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:118944107..118944167 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:110107148..110107208 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:117238700..117238760 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:121510610..121510670 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:122523097..122523157 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:93565556..93565616 -Gossypium anomalum (B1) genome NSF_v1n/a
Sequence
>UCD_cg10246_216 ID=UCD_cg10246_216; Name=UCD_cg10246_216; organism=Gossypium spp.; type=genetic_marker; length=65bp
CAATAGACTCCCACCCTCTGCCGCTTATCG[G/T]GGTGGTCCCTGTTTC
CATGCGGCCTCTACC