UCcg10207_258, UCcg10207_258 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10207_258
AliasUCcg10207_258
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceTATAAGGGGAACCTAAAACGTTAAAATGTA
3' Flanking SequenceCAACAATAATAATACATAAACAAAAAAAAA
SpeciesGossypium spp.
Source Typeintron
Primer 1cg10207_F: TTGTCAAGGCTGATGACTGC
Primer 2cg10207_R: CTCTACCAGGGATGAACCGA
Primer 3cg10207_F: TTGTCAAGGCTGATGACTGC
Primer 4cg10207_R: CTCTACCAGGGATGAACCGA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:13177857..13177917 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:16226476..16226536 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:12658424..12658483 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:18256924..18256984 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:47523149..47523208 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:24125218..24125277 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:46931497..46931557 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:15898124..15898184 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:12387856..12387916 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:16428991..16429051 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:13698758..13698818 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:17029196..17029256 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:13424613..13424673 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:16517852..16517912 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:13230344..13230404 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:16929884..16929944 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:13590613..13590673 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:16794759..16794819 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:13776819..13776879 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:16373873..16373933 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:13568496..13568556 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:16275815..16275875 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:13415984..13416044 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:17562327..17562387 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:14265551..14265611 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:16815516..16815576 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:13562547..13562607 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:16411425..16411485 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:13913049..13913109 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:16954879..16954939 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:16943563..16943623 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:18227145..18227205 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:12539447..12539507 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:18741256..18741316 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:13512914..13512974 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:11932668..11932728 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr02chromosomechr02:11929508..11929568 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:13184461..13184521 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:13083492..13083552 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:11720479..11720539 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:19971510..19971570 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr02chromosomeUCD_cg10207_258:1..61 .
Chr02:14490841..14490901 +		n/a
Sequence
>UCD_cg10207_258 ID=UCD_cg10207_258; Name=UCD_cg10207_258; organism=Gossypium spp.; type=genetic_marker; length=65bp
TATAAGGGGAACCTAAAACGTTAAAATGTA[A/T]CAACAATAATAATAC
ATAAACAAAAAAAAA