UCcg10200_570, UCcg10200_570 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10200_570
AliasUCcg10200_570
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
5' Flanking SequenceGTGATGTGGGTCAGCTTTCAATCTTGTTAA
3' Flanking SequenceTGCTTTTTTTTCCCTTTATTTTGGGCCTAA
SpeciesGossypium spp.
Source Typeintron
Primer 1cg10200_F: TTATGGCACTTGCTGTTGGA
Primer 2cg10200_R: CTGCAAAAATCATTGGGTTG
Primer 3cg10200_F: TTATGGCACTTGCTGTTGGA
Primer 4cg10200_R: CTGCAAAAATCATTGGGTTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:82081126..82081186 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:17421758..17421818 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:44890017..44890077 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:101950326..101950386 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:46851460..46851520 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:35592734..35592794 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:26642718..26642778 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:16709011..16709071 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:72889649..72889709 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:17402739..17402799 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:86038254..86038314 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:17845661..17845721 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:87550092..87550152 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:17384703..17384763 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:86147675..86147735 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:18002204..18002264 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:81355172..81355232 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:17956067..17956127 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:82231151..82231211 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:17249161..17249221 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:84047936..84047996 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:17741363..17741423 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:83532816..83532876 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:17622558..17622618 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:90415639..90415699 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:17941161..17941221 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:85218133..85218193 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:17782495..17782555 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:89150683..89150743 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:18093845..18093905 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:52774044..52774104 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:27368219..27368279 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:17250903..17250963 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:77100097..77100157 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:17531826..17531886 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:15326435..15326495 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:12847502..12847562 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:17690221..17690281 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:14171339..14171399 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:11080151..11080211 -Gossypium gossypioides (D6) genome ISU_v1n/a
E10chromosomeE10:83253955..83254015 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:21809072..21809132 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:117314168..117314228 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeUCD_cg10200_570:1..61 .
Chr11:17304421..17304481 -		n/a
Sequence
>UCD_cg10200_570 ID=UCD_cg10200_570; Name=UCD_cg10200_570; organism=Gossypium spp.; type=genetic_marker; length=65bp
GTGATGTGGGTCAGCTTTCAATCTTGTTAA[C/G]TGCTTTTTTTTCCCT
TTATTTTGGGCCTAA