UCcg10200_448, UCcg10200_448 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10200_448
AliasUCcg10200_448
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
5' Flanking SequenceAAAAGTTTCCTTCTTACCGACCATTTATCT
3' Flanking SequenceTTTACAGGTCATAATTCTATGATTTACTTC
SpeciesGossypium spp.
Source Typeintron
Primer 1cg10200_F: TTATGGCACTTGCTGTTGGA
Primer 2cg10200_R: CTGCAAAAATCATTGGGTTG
Primer 3cg10200_F: TTATGGCACTTGCTGTTGGA
Primer 4cg10200_R: CTGCAAAAATCATTGGGTTG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:82081004..82081064 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:17421881..17421940 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:44889895..44889954 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:37518499..37518559 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:101950204..101950264 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:46851338..46851397 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:35592856..35592916 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:26642596..26642656 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:16709134..16709193 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:72889527..72889587 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:17402862..17402921 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:86038132..86038192 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:17845784..17845843 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:87549970..87550030 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:17384826..17384885 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:86147553..86147613 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:18002327..18002386 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:81355050..81355110 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:17956190..17956249 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:82231029..82231089 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:17249284..17249343 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:84047814..84047874 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D10chromosomeD10:17741486..17741545 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:83532694..83532754 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017632.1chromosomeCM017632.1:17622681..17622740 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:90415517..90415577 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:17941284..17941343 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:85218011..85218071 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:17782618..17782677 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:89150561..89150621 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:18093968..18094027 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:52773922..52773982 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:27368341..27368401 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:17251026..17251085 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:77099975..77100035 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:17531949..17532008 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:15326558..15326617 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:12847625..12847684 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:17690344..17690403 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:14171461..14171521 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:11080273..11080333 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:13926632..13926692 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:83253834..83253894 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr10chromosomeChr10:117314290..117314350 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeUCD_cg10200_448:1..60 .
Chr11:17304544..17304603 -		n/a
Sequence
>UCD_cg10200_448 ID=UCD_cg10200_448; Name=UCD_cg10200_448; organism=Gossypium spp.; type=genetic_marker; length=65bp
AAAAGTTTCCTTCTTACCGACCATTTATCT[A/C]TTTACAGGTCATAAT
TCTATGATTTACTTC