UCcg10199_61, UCcg10199_61 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10199_61
AliasUCcg10199_61
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceAAACTCGGAATACAAAAATGATTGGATGCG
3' Flanking SequenceTATTTGGAAATTGTTTATTATTGTTCCTCT
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 2cg10199_R: ACCTCAATATGGTCGTATGCAA
Primer 3cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 4cg10199_R: ACCTCAATATGGTCGTATGCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:12224846..12224906 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:12094214..12094274 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:20642149..20642209 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:12281709..12281770 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:81733..81793 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:12530429..12530489 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:12504535..12504595 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:12221673..12221733 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:12727480..12727540 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:12403596..12403656 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:12416325..12416385 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:11821447..11821507 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:12241443..12241503 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:12817408..12817468 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:12422725..12422785 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:12898270..12898330 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:19156509..19156569 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:20475875..20475935 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:12006911..12006971 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:77949976..77950036 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:12629542..12629602 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:10391917..10391978 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:10174441..10174502 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:12753063..12753123 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:10567682..10567742 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:10195622..10195682 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:19700009..19700068 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr13chromosomeChr13:138578190..138578250 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeUCD_cg10199_61:1..61 .
Chr13:12053740..12053800 -		n/a
Sequence
>UCD_cg10199_61 ID=UCD_cg10199_61; Name=UCD_cg10199_61; organism=Gossypium spp.; type=genetic_marker; length=65bp
AAACTCGGAATACAAAAATGATTGGATGCG[A/G]TATTTGGAAATTGTT
TATTATTGTTCCTCT