UCcg10199_301, UCcg10199_301 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10199_301
AliasUCcg10199_301
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceGGAAGTTCGTATTGGCAATTTCACTGCACA
3' Flanking SequenceCTATATTTTAGCGGTTTAACCGCAATAATA
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 2cg10199_R: ACCTCAATATGGTCGTATGCAA
Primer 3cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 4cg10199_R: ACCTCAATATGGTCGTATGCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:12224606..12224666 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:12093974..12094034 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:12281469..12281529 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:81493..81553 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:12530189..12530249 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:12504295..12504355 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:12221433..12221493 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:12727240..12727300 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:12403356..12403416 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:12416085..12416145 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:11821207..11821267 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017661.1chromosomeCM017661.1:12817168..12817228 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:12422485..12422545 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:12898030..12898090 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:12006671..12006731 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:12629302..12629362 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:10391250..10391310 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:10174201..10174261 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:7691151..7691211 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeUCD_cg10199_301:1..61 .
Chr13:12053500..12053560 -		n/a
Sequence
>UCD_cg10199_301 ID=UCD_cg10199_301; Name=UCD_cg10199_301; organism=Gossypium spp.; type=genetic_marker; length=65bp
GGAAGTTCGTATTGGCAATTTCACTGCACA[A/G]CTATATTTTAGCGGT
TTAACCGCAATAATA