UCcg10199_288, UCcg10199_288 (genetic_marker) gossypium spp

Marker Overview


Name	UCD_cg10199_288
Alias	UCcg10199_288
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	ATTTCGAAAAGAAGGAAGTTCGTATTGGCA
3' Flanking Sequence	TTTCACTGCACAACTATATTTTAGCGGTTT
Species	Gossypium spp.
Source Type	SSR
Primer 1	cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 2	cg10199_R: ACCTCAATATGGTCGTATGCAA
Primer 3	cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 4	cg10199_R: ACCTCAATATGGTCGTATGCAA
Publication	[view all]
Contact	Van Deynze, Allen
Comment	Primer data obtained in 2010

Contact

Name

Details

Van Deynze, Allen

Description:	Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:	Allen
Last name:	Van Deynze
Title:	Biotechnology Specialist
Institution:	University of California
Address:	1 Shields Ave, Davis, CA 95616
Country:	United States
Email:	avandeynze@ucdavis.edu
Phone:	530-754-6444
Last update:	20-Feb-2007

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018227.1	chromosome	CM018227.1:12224619..12224679 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
Dt_chr13	chromosome	Dt_chr13:81506..81566 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
D13	chromosome	D13:12530202..12530262 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_D13	chromosome	Ghir_D13:12504308..12504368 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
D13	chromosome	D13:12221446..12221506 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
D13	chromosome	D13:12727253..12727313 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
D13	chromosome	D13:12403369..12403429 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_D13	chromosome	Gbar_D13:12416098..12416158 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
D13	chromosome	D13:11821220..11821280 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017661.1	chromosome	CM017661.1:12817181..12817241 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017713.1	chromosome	CM017713.1:12422498..12422558 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
D13	chromosome	D13:12898043..12898103 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr13	chromosome	Chr13:12629315..12629375 -	Gossypium thurberi (D1-5) genome CRI_v1	n/a
Chr13	chromosome	Chr13:7691164..7691224 -	Gossypium gossypioides (D6) genome ISU_v1	n/a

Publications


Year	Publication
2009	Van Deynze A, Stoffel K, Lee M, Wilkins TA, Kozik A, Cantrell RG, Yu JZ, Kohel RJ, Stelly DM. Sampling nucleotide diversity in cotton. BMC plant biology. 2009; 9:125.

Sequence

>UCD_cg10199_288 ID=UCD_cg10199_288; Name=UCD_cg10199_288; organism=Gossypium spp.; type=genetic_marker; length=65bp
ATTTCGAAAAGAAGGAAGTTCGTATTGGCA[A/G]TTTCACTGCACAACT
ATATTTTAGCGGTTT

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UCcg10199_288, UCcg10199_288 (genetic_marker) gossypium spp