UCcg10199_271, UCcg10199_271 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10199_271
AliasUCcg10199_271
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
5' Flanking SequenceTTTGGGATTAAGAATTGATTTCGAAAAGAA
3' Flanking SequenceGAAGTTCGTATTGGCAATTTCACTGCACAA
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 2cg10199_R: ACCTCAATATGGTCGTATGCAA
Primer 3cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 4cg10199_R: ACCTCAATATGGTCGTATGCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018227.1chromosomeCM018227.1:12224637..12224696 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_13chromosomeD5_13:12094004..12094064 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
D10_13chromosomeD10_13:12281499..12281559 -Gossypium turneri (D10) genome NSF_v1_a2
Dt_chr13chromosomeDt_chr13:81523..81583 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D13chromosomeD13:12530219..12530279 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D13chromosomeGhir_D13:12504325..12504385 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D13chromosomeD13:12221463..12221523 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D13chromosomeD13:12727270..12727330 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D13chromosomeD13:12403386..12403446 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D13chromosomeGbar_D13:12416116..12416175 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D13chromosomeD13:11821238..11821297 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017661.1chromosomeCM017661.1:12817198..12817258 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017713.1chromosomeCM017713.1:12422516..12422575 -Gossypium darwinii (AD5) genome HGS_v1.1
D13chromosomeD13:12898060..12898120 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr13chromosomeChr13:12006701..12006761 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr13chromosomeChr13:12629332..12629392 -Gossypium thurberi (D1-5) genome CRI_v1
Chr_13chromosomeChr_13:10174231..10174291 -Gossypium harknessii (D2-2) genome ISU_v1
Chr13chromosomeUCD_cg10199_271:1..61 .
Chr13:12053530..12053590 -
Sequence
>UCD_cg10199_271 ID=UCD_cg10199_271; Name=UCD_cg10199_271; organism=Gossypium spp.; type=genetic_marker; length=65bp
TTTGGGATTAAGAATTGATTTCGAAAAGAA[G/T]GAAGTTCGTATTGGC
AATTTCACTGCACAA