UCcg10199_266, UCcg10199_266 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10199_266
AliasUCcg10199_266
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceCTGCATTTGGGATTAAGAATTGATTTCGAA
3' Flanking SequenceAGAAGGAAGTTCGTATTGGCAATTTCACTG
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 2cg10199_R: ACCTCAATATGGTCGTATGCAA
Primer 3cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 4cg10199_R: ACCTCAATATGGTCGTATGCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:12224641..12224701 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:12094009..12094069 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:12281504..12281564 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:81528..81588 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:12530224..12530284 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:12504330..12504390 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:12221468..12221528 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:12727275..12727335 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:12403391..12403451 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:12416120..12416180 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:11821242..11821302 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017661.1chromosomeCM017661.1:12817203..12817263 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:12422520..12422580 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:12898065..12898125 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:12006706..12006766 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:12629337..12629397 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_13chromosomeChr_13:10174236..10174296 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:10567477..10567537 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:7691186..7691246 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeUCD_cg10199_266:1..61 .
Chr13:12053535..12053595 -		n/a
Sequence
>UCD_cg10199_266 ID=UCD_cg10199_266; Name=UCD_cg10199_266; organism=Gossypium spp.; type=genetic_marker; length=65bp
CTGCATTTGGGATTAAGAATTGATTTCGAA[A/G]AGAAGGAAGTTCGTA
TTGGCAATTTCACTG