UCcg10199_254, UCcg10199_254 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10199_254
AliasUCcg10199_254
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceTATGGTTTGCATCTGCATTTGGGATTAAGA
3' Flanking SequenceTTGATTTCGAAAAGAAGGAAGTTCGTATTG
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 2cg10199_R: ACCTCAATATGGTCGTATGCAA
Primer 3cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 4cg10199_R: ACCTCAATATGGTCGTATGCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018227.1chromosomeCM018227.1:12224653..12224713 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_13chromosomeD5_13:12094021..12094081 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
Dt_chr13chromosomeDt_chr13:81540..81600 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D13chromosomeD13:12530236..12530296 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D13chromosomeGhir_D13:12504342..12504402 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D13chromosomeD13:12221480..12221540 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D13chromosomeD13:12727287..12727347 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D13chromosomeD13:12403403..12403463 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D13chromosomeGbar_D13:12416132..12416192 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D13chromosomeD13:11821254..11821314 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017661.1chromosomeCM017661.1:12817215..12817275 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017713.1chromosomeCM017713.1:12422532..12422592 -Gossypium darwinii (AD5) genome HGS_v1.1
D13chromosomeD13:12898077..12898137 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr13chromosomeChr13:12006718..12006778 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
Chr13chromosomeChr13:12752870..12752930 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr13chromosomeChr13:10567489..10567549 -Gossypium aridum (D4) genome ISU_v1
Chr13chromosomeChr13:7691198..7691258 -Gossypium gossypioides (D6) genome ISU_v1
Chr13chromosomeChr13:10195429..10195489 -Gossypium lobatum (D7) genome ISU_v1
Chr13chromosomeUCD_cg10199_254:1..61 .
Chr13:12053547..12053607 -
Sequence
>UCD_cg10199_254 ID=UCD_cg10199_254; Name=UCD_cg10199_254; organism=Gossypium spp.; type=genetic_marker; length=65bp
TATGGTTTGCATCTGCATTTGGGATTAAGA[A/T]TTGATTTCGAAAAGA
AGGAAGTTCGTATTG