UCcg10199_154, UCcg10199_154 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10199_154
AliasUCcg10199_154
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceTGTTTCTATTAAACTAAGCTGATTTGCAAA
3' Flanking SequenceATGCTTATCTAATATGGAAACTAAATACAA
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 2cg10199_R: ACCTCAATATGGTCGTATGCAA
Primer 3cg10199_F: GCGTTATGCTAAACTCGGAATAC
Primer 4cg10199_R: ACCTCAATATGGTCGTATGCAA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:12224753..12224813 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:18840529..18840589 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:12094121..12094181 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:20642056..20642116 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:12281616..12281676 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:54464263..54464323 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:25672915..25672975 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:81640..81700 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:12530336..12530396 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:17989248..17989308 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:12504442..12504502 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:18384418..18384478 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:12221580..12221640 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:18818843..18818903 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:12727387..12727447 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:18338121..18338181 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:12403503..12403563 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:19017846..19017906 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:12416232..12416292 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:18834303..18834363 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:11821354..11821414 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:18879616..18879676 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:19023156..19023216 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:12817315..12817375 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:19817117..19817177 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:12422632..12422692 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:18766487..18766547 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:12898177..12898237 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:19669824..19669884 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:19156416..19156476 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:20475782..20475842 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:12006818..12006878 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:77950069..77950129 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:12629449..12629509 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:10391824..10391884 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:10174348..10174408 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:12752970..12753030 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:10567589..10567649 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:7691298..7691358 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:10195529..10195589 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:19699915..19699975 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr13chromosomeChr13:138578283..138578343 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeUCD_cg10199_154:1..61 .
Chr13:12053647..12053707 -		n/a
Sequence
>UCD_cg10199_154 ID=UCD_cg10199_154; Name=UCD_cg10199_154; organism=Gossypium spp.; type=genetic_marker; length=65bp
TGTTTCTATTAAACTAAGCTGATTTGCAAA[A/T]ATGCTTATCTAATAT
GGAAACTAAATACAA