UCcg10188_185, UCcg10188_185 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10188_185
AliasUCcg10188_185
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceTATAATTTATTTGGTTAACTATTCAGAATT
3' Flanking SequenceAGGTTAAAAGATCTGTCTAGCTCAGTAACA
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10188_F: CCGACTGTGTGACCCCTATT
Primer 2cg10188_R: CTTTGGAGCAACCGAAGAAG
Primer 3cg10188_F: CCGACTGTGTGACCCCTATT
Primer 4cg10188_R: CTTTGGAGCAACCGAAGAAG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:41496135..41496195 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:50479706..50479766 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:31047412..31047472 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:32466892..32466952 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:43412794..43412854 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:44837289..44837349 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:44841648..44841708 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:32160850..32160910 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:42763583..42763643 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:41958623..41958683 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:43266482..43266542 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:46763936..46763996 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:42297075..42297135 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:46012467..46012527 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:47921792..47921852 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Sequence
>UCD_cg10188_185 ID=UCD_cg10188_185; Name=UCD_cg10188_185; organism=Gossypium spp.; type=genetic_marker; length=65bp
TATAATTTATTTGGTTAACTATTCAGAATT[A/G]AGGTTAAAAGATCTG
TCTAGCTCAGTAACA