UCcg10183_216, UCcg10183_216 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10183_216
AliasUCcg10183_216
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
5' Flanking SequenceTTGTTGCTTTAATTTACCCAGGATCTACCG
3' Flanking SequenceCTCTTATATTTATATGGAATTGATACCTCG
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10183_F: GATCACAAAGGAACCCCAGA
Primer 2cg10183_R: CATGTCTGCCTAAAGGATTGG
Primer 3cg10183_F: GATCACAAAGGAACCCCAGA
Primer 4cg10183_R: CATGTCTGCCTAAAGGATTGG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:95859120..95859180 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:21425500..21425560 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:42891526..42891586 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:75724777..75724837 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:104791307..104791367 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:103583817..103583877 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:100895650..100895710 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:97981196..97981256 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:94222969..94223029 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
scaffold585_obj_A08supercontigscaffold585_obj_A08:74513..74573 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:97528152..97528212 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:101275797..101275857 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:107882255..107882315 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:96397570..96397630 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:105557340..105557400 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:109299544..109299604 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:107452043..107452103 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>UCD_cg10183_216 ID=UCD_cg10183_216; Name=UCD_cg10183_216; organism=Gossypium spp.; type=genetic_marker; length=65bp
TTGTTGCTTTAATTTACCCAGGATCTACCG[A/G]CTCTTATATTTATAT
GGAATTGATACCTCG