UCcg10183_92, UCcg10183_92 (genetic_marker) gossypium spp

Marker Overview


Name	UCD_cg10183_92
Alias	UCcg10183_92
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/T
5' Flanking Sequence	ACTAAGAGATACTGCAGTGAGATCTGAGGG
3' Flanking Sequence	AGAGCGCCTGCAAGGACTTATGCTATACGT
Species	Gossypium spp.
Source Type	SSR
Primer 1	cg10183_F: GATCACAAAGGAACCCCAGA
Primer 2	cg10183_R: CATGTCTGCCTAAAGGATTGG
Primer 3	cg10183_F: GATCACAAAGGAACCCCAGA
Primer 4	cg10183_R: CATGTCTGCCTAAAGGATTGG
Publication	[view all]
Contact	Van Deynze, Allen
Comment	Primer data obtained in 2010

Contact

Name

Details

Van Deynze, Allen

Description:	Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:	Allen
Last name:	Van Deynze
Title:	Biotechnology Specialist
Institution:	University of California
Address:	1 Shields Ave, Davis, CA 95616
Country:	United States
Email:	avandeynze@ucdavis.edu
Phone:	530-754-6444
Last update:	20-Feb-2007

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018212.1	chromosome	CM018212.1:95859244..95859304 -	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
At_chr1	chromosome	At_chr1:42891402..42891462 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A11	chromosome	A11:75724901..75724961 -	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A11	chromosome	Ghir_A11:104791431..104791491 -	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A11	chromosome	A11:103583941..103584001 -	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A11	chromosome	A11:100895774..100895834 -	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A11	chromosome	A11:97981320..97981380 -	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_A11	chromosome	Gbar_A11:94223093..94223153 -	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A11	chromosome	A11:97528276..97528336 -	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017620.1	chromosome	CM017620.1:101275921..101275981 -	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017646.1	chromosome	CM017646.1:107882379..107882439 -	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017698.1	chromosome	CM017698.1:96397694..96397754 -	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A11	chromosome	A11:105557464..105557524 -	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a

Publications


Year	Publication
2009	Van Deynze A, Stoffel K, Lee M, Wilkins TA, Kozik A, Cantrell RG, Yu JZ, Kohel RJ, Stelly DM. Sampling nucleotide diversity in cotton. BMC plant biology. 2009; 9:125.

Sequence

>UCD_cg10183_92 ID=UCD_cg10183_92; Name=UCD_cg10183_92; organism=Gossypium spp.; type=genetic_marker; length=65bp
ACTAAGAGATACTGCAGTGAGATCTGAGGG[C/T]AGAGCGCCTGCAAGG
ACTTATGCTATACGT

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UCcg10183_92, UCcg10183_92 (genetic_marker) gossypium spp