UCcg10183_126, UCcg10183_126 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10183_126
AliasUCcg10183_126
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceGCGCCTGCAAGGACTTATGCTATACGTGCT
3' Flanking SequenceGGGAAGAGGCAGAGTCTCACGATGTTATCA
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10183_F: GATCACAAAGGAACCCCAGA
Primer 2cg10183_R: CATGTCTGCCTAAAGGATTGG
Primer 3cg10183_F: GATCACAAAGGAACCCCAGA
Primer 4cg10183_R: CATGTCTGCCTAAAGGATTGG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:95859210..95859270 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:21425410..21425470 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:42891436..42891496 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold5082.1supercontigscaffold5082.1:2402..2462 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2945_A11supercontigscaffold2945_A11:4431..4491 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:75724867..75724927 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold2377supercontigScaffold2377:30633..30693 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:104791397..104791457 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:103583907..103583967 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:63771003..63771063 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:100895740..100895800 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:64320345..64320405 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:97981286..97981346 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:62626169..62626229 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:94223059..94223119 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:97528242..97528302 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:101275887..101275947 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:67067442..67067502 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:96397660..96397720 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:105557430..105557490 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:65895127..65895187 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:55926886..55926946 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:109299635..109299694 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:107452133..107452193 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>UCD_cg10183_126 ID=UCD_cg10183_126; Name=UCD_cg10183_126; organism=Gossypium spp.; type=genetic_marker; length=65bp
GCGCCTGCAAGGACTTATGCTATACGTGCT[C/T]GGGAAGAGGCAGAGT
CTCACGATGTTATCA