UCcg10178_313, UCcg10178_313 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10178_313
AliasUCcg10178_313
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
5' Flanking SequenceAGTTTGTGAAGGTGTGATAGGCTTGCATTA
3' Flanking SequenceATATGCCTGGTTGAATTTGGGAAATTTCTT
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10178_F: ACGTGTATGGTGGAGGTCACT
Primer 2cg10178_R: GGACGTTGGCAAATTCTGAT
Primer 3cg10178_F: ACGTGTATGGTGGAGGTCACT
Primer 4cg10178_R: GGACGTTGGCAAATTCTGAT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:37394693..37394753 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:16684566..16684626 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:36288174..36288234 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr12chromosomeDt_chr12:26307817..26307877 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:34332376..34332436 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:39125571..39125631 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:40300229..40300289 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:39310847..39310907 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:36948692..36948752 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:35462852..35462912 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:40662717..40662777 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:37880682..37880742 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:40441424..40441484 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:37695196..37695256 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:40791193..40791253 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:16648660..16648720 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:37407343..37407403 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:48527072..48527132 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:47190585..47190645 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:36882640..36882700 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:44793154..44793214 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:37953474..37953534 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:46935723..46935783 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr04chromosomeChr04:117949199..117949259 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomeUCD_cg10178_313:1..61 .
Chr09:62969580..62969640 -		n/a
Sequence
>UCD_cg10178_313 ID=UCD_cg10178_313; Name=UCD_cg10178_313; organism=Gossypium spp.; type=genetic_marker; length=65bp
AGTTTGTGAAGGTGTGATAGGCTTGCATTA[A/T]ATATGCCTGGTTGAA
TTTGGGAAATTTCTT