UCcg10178_118, UCcg10178_118 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10178_118
AliasUCcg10178_118
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceACCCCAATCCTAATCTCTTTAAACATTAGT
3' Flanking SequenceGCTGATCTCAATAGTCTTTGCAATGACATG
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10178_F: ACGTGTATGGTGGAGGTCACT
Primer 2cg10178_R: GGACGTTGGCAAATTCTGAT
Primer 3cg10178_F: ACGTGTATGGTGGAGGTCACT
Primer 4cg10178_R: GGACGTTGGCAAATTCTGAT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:37394886..37394946 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:16684374..16684434 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_04chromosomeD10_04:36288366..36288426 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:97253103..97253163 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:26307624..26307684 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:34332569..34332629 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:39125764..39125824 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:40300422..40300482 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:39311040..39311100 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:36948885..36948945 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:35463045..35463105 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:40662910..40662970 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:37880875..37880935 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:40441617..40441677 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:37695389..37695449 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:40791386..40791446 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:16648468..16648528 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:22732756..22732815 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:37407538..37407598 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:48527264..48527324 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:47190777..47190837 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:36882832..36882892 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:44793454..44793514 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:37953666..37953726 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:46936074..46936134 -Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:68315740..68315800 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:69365590..69365650 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:117949391..117949451 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr09chromosomeUCD_cg10178_118:1..61 .
Chr09:62969772..62969832 -		n/a
Sequence
>UCD_cg10178_118 ID=UCD_cg10178_118; Name=UCD_cg10178_118; organism=Gossypium spp.; type=genetic_marker; length=65bp
ACCCCAATCCTAATCTCTTTAAACATTAGT[A/G]GCTGATCTCAATAGT
CTTTGCAATGACATG