UCcg10174_331, UCcg10174_331 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10174_331
AliasUCcg10174_331
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceCGATTCATGAAGTCCCTAAAATTACAAACG
3' Flanking SequenceACATGGTCATCAGTCCATCCATGTGGCTTC
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10174_F: GTCACACGGTTTCCCACATAG
Primer 2cg10174_R: TCAGTCATTCAGATCACAGATTCC
Primer 3cg10174_F: GTCACACGGTTTCCCACATAG
Primer 4cg10174_R: TCAGTCATTCAGATCACAGATTCC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:15469196..15469256 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:17143162..17143222 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:15164367..15164427 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:15634489..15634549 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:16223036..16223096 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:15732093..15732153 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:16123125..16123185 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:15987845..15987905 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:15616641..15616701 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:15522563..15522623 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:16761441..16761501 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:16294543..16294603 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:15662315..15662375 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:16148009..16148069 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:15816791..15816851 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:16964487..16964547 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F01chromosomeF01:13462832..13462891 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>UCD_cg10174_331 ID=UCD_cg10174_331; Name=UCD_cg10174_331; organism=Gossypium spp.; type=genetic_marker; length=65bp
CGATTCATGAAGTCCCTAAAATTACAAACG[C/T]ACATGGTCATCAGTC
CATCCATGTGGCTTC