UCcg10172_131, UCcg10172_131 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10172_131
AliasUCcg10172_131
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceATCGCCATGAATCTTCAAAATTTTGTAACA
3' Flanking SequenceGTTCCTGAAAAAATTCATATTCGGGCTGAT
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10172_F: CCGGCTAATTCTTCTAGCTGTT
Primer 2cg10172_R: CCACGGTATGTATCCCAGAAAT
Primer 3cg10172_F: CCGGCTAATTCTTCTAGCTGTT
Primer 4cg10172_R: CCACGGTATGTATCCCAGAAAT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:55574251..55574311 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:49892376..49892436 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr2chromosomeAt_chr2:25098209..25098269 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:54287729..54287789 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:55461598..55461658 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:56400186..56400246 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:56119909..56119969 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:55173497..55173557 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:55689132..55689192 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:58393296..58393356 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:55456177..55456237 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:57548533..57548593 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:56371402..56371462 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:58463471..58463531 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:50803587..50803647 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:51161318..51161378 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:40949044..40949104 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:40068131..40068191 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:36496884..36496944 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:38977874..38977934 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeUCD_cg10172_131:1..61 .
Chr09:51079131..51079191 +		n/a
Sequence
>UCD_cg10172_131 ID=UCD_cg10172_131; Name=UCD_cg10172_131; organism=Gossypium spp.; type=genetic_marker; length=65bp
ATCGCCATGAATCTTCAAAATTTTGTAACA[A/T]GTTCCTGAAAAAATT
CATATTCGGGCTGAT