UCcg10163_237, UCcg10163_237 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10163_237
AliasUCcg10163_237
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceAGGCAGACACGACCGTGTGTCCAAAACACA
3' Flanking SequenceGCCCGTGTGGGATCCCTAAATCCCCAAATT
SpeciesGossypium spp.
Source TypeSSR
Primer 1cg10163_F: ACGGGTTCAGAATTAGACATCAG
Primer 2cg10163_R: GTATGTTTTGGTGCCACACG
Primer 3cg10163_F: ACGGGTTCAGAATTAGACATCAG
Primer 4cg10163_R: GTATGTTTTGGTGCCACACG
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018209.1chromosomeCM018209.1:110091846..110091906 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_04chromosomeD5_04:12632745..12632804 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
scaffold149.1supercontigscaffold149.1:1593485..1593545 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A08chromosomeA08:95485017..95485077 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A08chromosomeGhir_A08:113324903..113324963 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A08chromosomeA08:116213067..116213127 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A08chromosomeA08:116141118..116141178 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A08chromosomeA08:112061125..112061185 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A08chromosomeGbar_A08:110773378..110773438 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A08chromosomeA08:111845148..111845208 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017617.1chromosomeCM017617.1:110276150..110276210 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017645.1chromosomeCM017645.1:109524252..109524310 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017643.1chromosomeCM017643.1:119714973..119715033 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017695.1chromosomeCM017695.1:110892522..110892582 +Gossypium darwinii (AD5) genome HGS_v1.1
A08chromosomeA08:118035451..118035511 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr08chromosomeChr08:122315093..122315153 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr04chromosomeChr04:12589156..12589215 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_06chromosomeB_06:90579460..90579520 -Gossypium anomalum (B1) genome NSF_v1
B_05chromosomeB_05:52182455..52182516 -Gossypium anomalum (B1) genome NSF_v1
Chr07chromosomeChr07:23222538..23222597 -Gossypium thurberi (D1-5) genome CRI_v1
F06chromosomeF06:5927586..5927645 +Gossypium longicalyx (F1) genome NSF_v1
F09chromosomeF09:49732677..49732736 -Gossypium longicalyx (F1) genome NSF_v1
Chr06chromosomeChr06:193110793..193110853 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr12chromosomeUCD_cg10163_237:2..61 .
Chr12:22869847..22869906 +
Sequence
>UCD_cg10163_237 ID=UCD_cg10163_237; Name=UCD_cg10163_237; organism=Gossypium spp.; type=genetic_marker; length=65bp
AGGCAGACACGACCGTGTGTCCAAAACACA[C/T]GCCCGTGTGGGATCC
CTAAATCCCCAAATT