UCcg10134_502, UCcg10134_502 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10134_502
AliasUCcg10134_502
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceGTTGCCATTTCTGCAGATCTGATTTTTTTT
3' Flanking SequenceAAAATTGATACAAGTAAAAGAAGTTTCAAA
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10134_F: TTCATTCCTCTGCATCTCCA
Primer 2cg10134_R: CTCTCCTCGCGGCATATC
Primer 3cg10134_F: TTCATTCCTCTGCATCTCCA
Primer 4cg10134_R: CTCTCCTCGCGGCATATC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018206.1chromosomeCM018206.1:9358798..9358858 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
KI_05chromosomeKI_05:7028834..7028893 +Gossypioides kirkii genome ISU_v3
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:9357437..9357496 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
CM016626.1chromosomeCM016626.1:13241330..13241389 +Gossypium australe (G2) genome CRI_v1.1
At_chr9chromosomeAt_chr9:52693868..52693927 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A05chromosomeA05:8753529..8753588 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A05chromosomeGhir_A05:9439631..9439690 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A05chromosomeA05:9191409..9191468 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A05chromosomeA05:9473859..9473917 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A05chromosomeA05:9855304..9855363 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A05chromosomeGbar_A05:9002862..9002922 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A05chromosomeA05:9560934..9560994 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017614.1chromosomeCM017614.1:9387877..9387937 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017640.1chromosomeCM017640.1:9531406..9531465 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017692.1chromosomeCM017692.1:9301473..9301533 +Gossypium darwinii (AD5) genome HGS_v1.1
A05chromosomeA05:9625965..9626024 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr05chromosomeChr05:10122767..10122826 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr05chromosomeChr05:9236145..9236204 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_05chromosomeB_05:76788583..76788642 -Gossypium anomalum (B1) genome NSF_v1
Chr09chromosomeChr09:8337615..8337673 +Gossypium davidsonii (D3d-8) genome CRI_v1
E05chromosomeE05:10058819..10058879 +Gossypium stocksii (E1) genome NSF_v1
F05chromosomeF05:8145437..8145497 +Gossypium longicalyx (F1) genome NSF_v1
Chr13chromosomeChr13:189027267..189027326 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Sequence
>UCD_cg10134_502 ID=UCD_cg10134_502; Name=UCD_cg10134_502; organism=Gossypium spp.; type=genetic_marker; length=65bp
GTTGCCATTTCTGCAGATCTGATTTTTTTT[A/T]AAAATTGATACAAGT
AAAAGAAGTTTCAAA