UCcg10128_484, UCcg10128_484 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10128_484
AliasUCcg10128_484
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceCCCAATTCTCCCTAGCTTCCTTTAAGTCGA
3' Flanking SequenceAGCTACCATTGACCCTCTAGGAAATAAGCT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10128_F: ACAAGAGCTGCAACAAGCAC
Primer 2cg10128_R: CATGCACAAATGAGGACAAGA
Primer 3cg10128_F: ACAAGAGCTGCAACAAGCAC
Primer 4cg10128_R: CATGCACAAATGAGGACAAGA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018205.1chromosomeCM018205.1:49754216..49754276 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:35133460..35133520 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
Dt_chr4chromosomeDt_chr4:8720063..8720123 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A04chromosomeA04:31548045..31548105 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A04chromosomeGhir_A04:52573231..52573291 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A04chromosomeA04:55027140..55027200 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A04chromosomeA04:52721215..52721275 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A04chromosomeA04:48612470..48612530 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A04chromosomeGbar_A04:49917230..49917290 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A04chromosomeA04:50674074..50674134 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017613.1chromosomeCM017613.1:52438704..52438764 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017639.1chromosomeCM017639.1:58014546..58014606 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017691.1chromosomeCM017691.1:50202656..50202716 +Gossypium darwinii (AD5) genome HGS_v1.1
A04chromosomeA04:55589458..55589518 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr04chromosomeChr04:75916419..75916479 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr04chromosomeChr04:76363665..76363725 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Sequence
>UCD_cg10128_484 ID=UCD_cg10128_484; Name=UCD_cg10128_484; organism=Gossypium spp.; type=genetic_marker; length=65bp
CCCAATTCTCCCTAGCTTCCTTTAAGTCGA[A/G]AGCTACCATTGACCC
TCTAGGAAATAAGCT