UCcg10111_472, UCcg10111_472 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10111_472
AliasUCcg10111_472
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
5' Flanking SequenceCTTGAGGAGGTTACGTGTGACGGCGATCAA
3' Flanking SequenceCCCTTGCGGAGTCCGTCGAGGCCTGGAACT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10111_F: GCTCCTCCTCACAGTTCCAG
Primer 2cg10111_R: TCGAAATTGAATAACAGAGATCCA
Primer 3cg10111_F: GCTCCTCCTCACAGTTCCAG
Primer 4cg10111_R: TCGAAATTGAATAACAGAGATCCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018215.1chromosomeCM018215.1:43466936..43466996 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018202.1chromosomeCM018202.1:78874918..78874978 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_01chromosomeD5_01:38418018..38418077 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_01chromosomeKI_01:28769661..28769721 -Gossypioides kirkii genome ISU_v3
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:73683728..73683788 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_01chromosomeD10_01:19058238..19058298 -Gossypium turneri (D10) genome NSF_v1_a2
CM016614.1chromosomeCM016614.1:93073259..93073319 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr2chromosomeDt_chr2:19324714..19324774 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold5172supercontigscaffold5172:21315..21375 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
D01chromosomeD01:41570972..41571032 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D01chromosomeGhir_D01:43341931..43341991 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A01chromosomeGhir_A01:82607428..82607488 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D01chromosomeD01:45278854..45278914 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A01chromosomeA01:83606437..83606497 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D01chromosomeD01:44726102..44726162 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A01chromosomeA01:81137097..81137157 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D01chromosomeD01:42223573..42223633 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A01chromosomeA01:79053961..79054021 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_D01chromosomeGbar_D01:43653219..43653279 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A01chromosomeGbar_A01:81177384..81177444 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D01chromosomeD01:44457886..44457946 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A01chromosomeA01:81274361..81274421 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017623.1chromosomeCM017623.1:44441970..44442030 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017610.1chromosomeCM017610.1:79024602..79024662 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017649.1chromosomeCM017649.1:45584144..45584204 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017636.1chromosomeCM017636.1:84535737..84535797 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017701.1chromosomeCM017701.1:43862177..43862237 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017688.1chromosomeCM017688.1:76826038..76826098 -Gossypium darwinii (AD5) genome HGS_v1.1
D01chromosomeD01:45213622..45213682 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A01chromosomeA01:84384626..84384686 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr01chromosomeChr01:78957469..78957529 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr01chromosomeChr01:33945355..33945415 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_01chromosomeB_01:68062613..68062673 +Gossypium anomalum (B1) genome NSF_v1
Chr02chromosomeChr02:42409985..42410045 +Gossypium thurberi (D1-5) genome CRI_v1
chr02chromosomechr02:32368534..32368594 +Gossypium armourianum (D2-1) genome ISU_v1
Chr_02chromosomeChr_02:29440927..29440987 +Gossypium harknessii (D2-2) genome ISU_v1
Chr02chromosomeChr02:42838101..42838161 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr02chromosomeChr02:32125702..32125762 +Gossypium aridum (D4) genome ISU_v1
Chr02chromosomeChr02:25034345..25034405 +Gossypium gossypioides (D6) genome ISU_v1
Chr02chromosomeChr02:30745317..30745377 +Gossypium lobatum (D7) genome ISU_v1
E01chromosomeE01:77645102..77645162 +Gossypium stocksii (E1) genome NSF_v1
F01chromosomeF01:47437421..47437481 -Gossypium longicalyx (F1) genome NSF_v1
Chr01chromosomeChr01:69805478..69805538 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr02chromosomeUCD_cg10111_472:1..61 .
Chr02:44291742..44291802 +
Sequence
>UCD_cg10111_472 ID=UCD_cg10111_472; Name=UCD_cg10111_472; organism=Gossypium spp.; type=genetic_marker; length=65bp
CTTGAGGAGGTTACGTGTGACGGCGATCAA[C/G]CCCTTGCGGAGTCCG
TCGAGGCCTGGAACT