UCcg10027_561, UCcg10027_561 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10027_561
AliasUCcg10027_561
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceTTCCTATCTTGTACTTTAAATTTGTCTCAT
3' Flanking SequenceTTTGCTTGTAACCGGATTTTAGTTTTACCC
SpeciesGossypium spp.
Source TypeEST 5' end
Primer 1cg10027_F: CCCTCAAAGACGTTGGTGTT
Primer 2cg10027_R: CATCTGTTGGGTAACCAGAGC
Primer 3cg10027_F: CCCTCAAAGACGTTGGTGTT
Primer 4cg10027_R: CATCTGTTGGGTAACCAGAGC
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
CM018206.1chromosomeCM018206.1:17317429..17317489 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:17545726..17545786 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
scaffold1899.1supercontigscaffold1899.1:284195..284255 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A05chromosomeA05:16046291..16046351 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A05chromosomeGhir_A05:17677152..17677212 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A05chromosomeA05:17141605..17141665 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A05chromosomeA05:17690620..17690680 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A05chromosomeA05:17863445..17863505 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A05chromosomeGbar_A05:16928605..16928665 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A05chromosomeA05:17609813..17609873 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017614.1chromosomeCM017614.1:17348229..17348289 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017640.1chromosomeCM017640.1:17729360..17729420 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017692.1chromosomeCM017692.1:17151019..17151079 +Gossypium darwinii (AD5) genome HGS_v1.1
A05chromosomeA05:17962440..17962500 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr05chromosomeChr05:18589147..18589207 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr05chromosomeChr05:17420384..17420444 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
B_05chromosomeB_05:68872998..68873059 -Gossypium anomalum (B1) genome NSF_v1
E05chromosomeE05:18971787..18971847 +Gossypium stocksii (E1) genome NSF_v1
F05chromosomeF05:15015399..15015459 +Gossypium longicalyx (F1) genome NSF_v1
Chr13chromosomeChr13:175611999..175612059 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Sequence
>UCD_cg10027_561 ID=UCD_cg10027_561; Name=UCD_cg10027_561; organism=Gossypium spp.; type=genetic_marker; length=65bp
TTCCTATCTTGTACTTTAAATTTGTCTCAT[A/T]TTTGCTTGTAACCGG
ATTTTAGTTTTACCC