UCcg10021_73, UCcg10021_73 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10021_73
AliasUCcg10021_73
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceTGTCGCAATCCTTCTCTCCAACCGCTCATC
3' Flanking SequenceGATCGCCACCGCTCCAAATACCAACTCATT
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 2cg10021_R: ATGGTCTTCAATGCCTTCCA
Primer 3cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 4cg10021_R: ATGGTCTTCAATGCCTTCCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018224.1chromosomeCM018224.1:32692863..32692923 +
D5_10chromosomeD5_10:30114783..30114843 -
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:67569588..67569648 -
D10_10chromosomeD10_10:30917820..30917880 -
CM016623.1chromosomeCM016623.1:68950173..68950233 -
At_chr11chromosomeAt_chr11:89573619..89573679 +
Dt_chr11chromosomeDt_chr11:38325497..38325557 -
D10chromosomeD10:33270447..33270507 +
A10chromosomeA10:43223750..43223810 -
Ghir_D10chromosomeGhir_D10:33144108..33144168 +
Ghir_A10chromosomeGhir_A10:55163831..55163891 -
D10chromosomeD10:32300645..32300705 +
A10chromosomeA10:57314647..57314707 -
D10chromosomeD10:33099014..33099074 +
A10chromosomeA10:55319861..55319921 -
D10chromosomeD10:33314821..33314881 +
A10chromosomeA10:50986869..50986929 -
Gbar_D10chromosomeGbar_D10:32573177..32573237 +
D10chromosomeD10:33069910..33069970 +
CM017632.1chromosomeCM017632.1:36686822..36686882 -
CM017619.1chromosomeCM017619.1:53284648..53284708 -
CM017658.1chromosomeCM017658.1:33545309..33545369 +
CM017645.1chromosomeCM017645.1:57799288..57799348 -
CM017710.1chromosomeCM017710.1:33265200..33265260 +
D10chromosomeD10:33529516..33529576 +
A10chromosomeA10:58159232..58159292 -
Chr10chromosomeChr10:18578211..18578271 -
Chr10chromosomeChr10:58765258..58765318 +
Chr10chromosomeChr10:32546378..32546438 +
B_10chromosomeB_10:49971767..49971827 -
Chr11chromosomeChr11:32945872..32945932 -
chr11chromosomechr11:28230022..28230082 +
Chr_11chromosomeChr_11:22786370..22786430 +
Chr11chromosomeChr11:33530081..33530141 +
Chr11chromosomeChr11:24770784..24770844 +
Chr11chromosomeChr11:19172307..19172367 +
Chr11chromosomeChr11:24691381..24691441 +
F10chromosomeF10:48267934..48267994 +
Chr10chromosomeChr10:80738149..80738209 -
Chr11chromosomeUCD_cg10021_73:1..61 .
Chr11:32364155..32364215 +
Sequence
>UCD_cg10021_73 ID=UCD_cg10021_73; Name=UCD_cg10021_73; organism=Gossypium spp.; type=genetic_marker; length=65bp
TGTCGCAATCCTTCTCTCCAACCGCTCATC[C/T]GATCGCCACCGCTCC
AAATACCAACTCATT