UCcg10021_169, UCcg10021_169 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10021_169
AliasUCcg10021_169
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
5' Flanking SequenceATGCTACAACTGCGTCTTCCAACGTGAGGA
3' Flanking SequenceGACACCAAAAGAATCGGCATTTCCCTCTCG
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 2cg10021_R: ATGGTCTTCAATGCCTTCCA
Primer 3cg10021_F: ATGCTCGTCTCAAATTGCCT
Primer 4cg10021_R: ATGGTCTTCAATGCCTTCCA
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:32692959..32693019 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:30114687..30114747 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:67569492..67569552 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:30917724..30917784 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:68950077..68950137 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:89573715..89573775 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr11chromosomeDt_chr11:38325401..38325461 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:33270543..33270603 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:43223654..43223714 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:33144204..33144264 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:55163735..55163795 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:32300741..32300801 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:57314551..57314611 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:33099110..33099170 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:55319765..55319825 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:33314917..33314977 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:50986773..50986833 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:32573273..32573333 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:33070006..33070066 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:36686726..36686786 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:53284552..53284612 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:33545405..33545465 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:57799192..57799252 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:33265296..33265356 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:33529612..33529672 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:58159136..58159196 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:18578115..18578175 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:58765354..58765414 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:32546474..32546534 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:49971671..49971731 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:32945776..32945836 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:28230118..28230178 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:22786466..22786526 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:33530177..33530237 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:24770880..24770940 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:19172403..19172463 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:24691477..24691537 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:57468327..57468387 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:48268030..48268090 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:80738053..80738113 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeUCD_cg10021_169:1..61 .
Chr11:32364251..32364311 +		n/a
Sequence
>UCD_cg10021_169 ID=UCD_cg10021_169; Name=UCD_cg10021_169; organism=Gossypium spp.; type=genetic_marker; length=65bp
ATGCTACAACTGCGTCTTCCAACGTGAGGA[C/T]GACACCAAAAGAATC
GGCATTTCCCTCTCG