UCcg10010_234, UCcg10010_234 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10010_234
AliasUCcg10010_234
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
5' Flanking SequenceGAGCATATGGAATGTTTAGTACCGGAAGAT
3' Flanking SequenceCAAAGCATAATCCATCCCAAATGTCTAAGC
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 2cg10010_R: AGAGGCATCGCATAATTGCT
Primer 3cg10010_F: CAACCATAAGCAGTAACAAAACCA
Primer 4cg10010_R: AGAGGCATCGCATAATTGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:54597176..54597237 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:92399441..92399501 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:50016489..50016550 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:1208040..1208100 +Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:96018461..96018521 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:1449318..1449378 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:2389379..2389439 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2269.1supercontigscaffold2269.1:119889..119949 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold104.1supercontigscaffold104.1:1370095..1370156 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:53736396..53736457 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:76867089..76867149 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:57697474..57697535 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:96326622..96326682 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:56942143..56942204 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:95247390..95247450 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:57320606..57320667 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:95322482..95322542 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:53652406..53652467 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:91835653..91835713 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:54987188..54987249 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:91341692..91341752 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:55569087..55569148 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:93658362..93658422 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:55528477..55528538 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:95360822..95360882 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:56523407..56523468 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:98247482..98247542 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:55603340..55603401 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:93698922..93698982 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:57917228..57917289 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:97512107..97512167 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:99253786..99253846 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:100591607..100591667 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:1455530..1455591 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:81539169..81539229 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:54458274..54458332 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:44180740..44180800 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:39094216..39094276 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:54306132..54306193 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:41218680..41218741 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:32061546..32061606 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:39822656..39822717 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:1230033..1230093 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:81047977..81048037 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:156097791..156097851 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr01chromosomeUCD_cg10010_234:1..61 .
Chr01:54072187..54072248 +		n/a
Sequence
>UCD_cg10010_234 ID=UCD_cg10010_234; Name=UCD_cg10010_234; organism=Gossypium spp.; type=genetic_marker; length=65bp
GAGCATATGGAATGTTTAGTACCGGAAGAT[C/T]CAAAGCATAATCCAT
CCCAAATGTCTAAGC