UCcg10005_602, UCcg10005_602 (genetic_marker) gossypium spp

Marker Overview
NameUCD_cg10005_602
AliasUCcg10005_602
dbSNP IDN/A
TypeSNP
SNP AllelesC/A
5' Flanking SequenceCACAACGACAGCAACAATCTTGTTATTCCT
3' Flanking SequenceTAGATCTGAGTACAATTACTAGACTATGAA
SpeciesGossypium spp.
Source TypeEST 3' end
Primer 1cg10005_F: CCTTCTCCACCAAGCTTCAG
Primer 2cg10005_R: GCCATTGATGGCATTGCT
Primer 3cg10005_F: CCTTCTCCACCAAGCTTCAG
Primer 4cg10005_R: GCCATTGATGGCATTGCT
Publication[view all]
ContactVan Deynze, Allen
CommentPrimer data obtained in 2010
Contact
NameDetails
Van Deynze, Allen
Description:Deployment of moloecular markers in breding and breeding systems. ; Gene Flow and transgenics
First name:Allen
Last name:Van Deynze
Title:Biotechnology Specialist
Institution:University of California
Address:1 Shields Ave, Davis, CA 95616
Country:United States
Email:avandeynze@ucdavis.edu
Phone:530-754-6444
Last update:20-Feb-2007
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018211.1chromosomeCM018211.1:64616937..64616997 +
CM018224.1chromosomeCM018224.1:27410504..27410564 -
D5_10chromosomeD5_10:34917108..34917168 +
KI_10chromosomeKI_10:30508813..30508873 +
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:82549473..82549533 +
D10_10chromosomeD10_10:36280849..36280909 +
CM016623.1chromosomeCM016623.1:60701855..60701915 -
At_chr11chromosomeAt_chr11:34272900..34272960 +
Dt_chr11chromosomeDt_chr11:26531492..26531552 -
A10chromosomeA10:56899969..56900029 +
D10chromosomeD10:27803968..27804028 -
Ghir_A10chromosomeGhir_A10:68430268..68430328 +
Ghir_D10chromosomeGhir_D10:27692030..27692090 -
A10chromosomeA10:70010807..70010867 +
D10chromosomeD10:26913601..26913661 -
A10chromosomeA10:68191585..68191645 +
D10chromosomeD10:27855243..27855303 -
A10chromosomeA10:63843424..63843484 +
D10chromosomeD10:27821658..27821718 -
Gbar_A10chromosomeGbar_A10:64983224..64983284 +
Gbar_D10chromosomeGbar_D10:27339347..27339407 -
A10chromosomeA10:66527271..66527331 +
D10chromosomeD10:27602986..27603046 -
CM017619.1chromosomeCM017619.1:65620391..65620451 +
CM017632.1chromosomeCM017632.1:27346989..27347049 -
CM017645.1chromosomeCM017645.1:71077986..71078046 +
CM017658.1chromosomeCM017658.1:27880792..27880852 -
CM017697.1chromosomeCM017697.1:67472637..67472697 +
CM017710.1chromosomeCM017710.1:27971908..27971968 -
A10chromosomeA10:71254581..71254641 +
D10chromosomeD10:28022946..28023006 -
Chr10chromosomeChr10:33793947..33794007 +
Chr10chromosomeChr10:45472823..45472883 -
Chr10chromosomeChr10:27273869..27273929 -
B_10chromosomeB_10:61126137..61126197 +
Chr11chromosomeChr11:38312149..38312209 +
chr11chromosomechr11:23916198..23916258 -
Chr_11chromosomeChr_11:19510287..19510347 -
Chr11chromosomeChr11:27990276..27990336 -
Chr11chromosomeChr11:21374101..21374161 -
Chr11chromosomeChr11:16600572..16600632 -
Chr11chromosomeChr11:21342768..21342828 -
E10chromosomeE10:66639215..66639275 +
F10chromosomeF10:37545370..37545430 +
Chr10chromosomeChr10:66174388..66174448 -
Chr11chromosomeUCD_cg10005_602:1..61 .
Chr11:27153149..27153209 -
Sequence
>UCD_cg10005_602 ID=UCD_cg10005_602; Name=UCD_cg10005_602; organism=Gossypium spp.; type=genetic_marker; length=65bp
CACAACGACAGCAACAATCTTGTTATTCCT[A/C]TAGATCTGAGTACAA
TTACTAGACTATGAA