NAU_RAD_A05_76872945, NAU_RAD_A05_76872945 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_RAD_A05_76872945
Genbank IDN/A
TypeRAD
SpeciesGossypium hirsutum
Restriction EnzymeEcoR-I; Bfa-I
Publication[view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:6680592..6680892 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:7195958..7196258 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:6166568..6166868 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:7080521..7080821 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:5873460..5873760 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:5354537..5354837 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:7125625..7125925 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:54630974..54631274 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:10384865..10385165 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:54330217..54330517 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:6389677..6389977 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:6577825..6578125 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:6512188..6512488 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:7206026..7206326 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:6270975..6271275 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:7006027..7006327 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:6445408..6445708 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:7208508..7208808 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:6314809..6315109 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:7588921..7589221 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:6409784..6410084 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:6780332..6780632 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:6478587..6478887 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:7352405..7352705 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:6326587..6326887 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:7163367..7163667 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:6700639..6700939 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:7263891..7264191 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:6354492..6354792 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:7074764..7075064 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:6472133..6472433 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:7384703..7385003 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:7662954..7663254 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:7003972..7004272 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:5908360..5908660 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:79031141..79031441 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:6087389..6087689 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:5650026..5650326 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09_2416142chromosomeChr09_2416142:4461..4761 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:6293203..6293503 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:5709139..5709439 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:4740246..4740546 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:5579176..5579476 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:7702013..7702313 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:6164860..6165159 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:190614064..190614364 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
D05chromosomeNAU_RAD_A05_76872945:1..301 .
D05:6389677..6389977 -		n/a
A05chromosomeNAU_RAD_A05_76872945:1..301 .
A05:6577825..6578125 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prema x 86-1, RIL (2015)AD_ch05_At.05N/A2.53A05_76872945View
Sequence
>NAU_RAD_A05_76872945 ID=NAU_RAD_A05_76872945; Name=NAU_RAD_A05_76872945; organism=Gossypium hirsutum; type=genetic_marker; length=301bp
ATCTCAATCCCTCCAACTTCAACAACAATGGATCCATCATTTAAGATGCT
TACTGTCGCACGAGTTGGCTTCACAATCACTTCTTGCACGATCGGCACAC
GCGAAATCCCTCGTTTCCTCCATTTATTAAATCTGTTGAATTCTTTTATC
ATTTCAGTCCTCTGGTGAAAGCTTGAAGAAACGGCCAACTTATCCCATAT
TGCAGGCAAAGTATACTGTAATGGTTCACCTGCAGAGCTCTTGTAAAACA
AGCCGAGGCTGCCGTATGTGTGGAGATTGATACTTCGGACGGTGTCCACC
T