NAU_RAD_A04_50925942, NAU_RAD_A04_50925942 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	NAU_RAD_A04_50925942
Genbank ID	N/A
Type	RAD
Species	Gossypium hirsutum
Restriction Enzyme	EcoR-I; Bfa-I
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A04	chromosome	A04:81177312..81177612 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
CM018205.1	chromosome	CM018205.1:79575938..79576241 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
scaffold2911.1	supercontig	scaffold2911.1:154909..155209 +	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A04	chromosome	A04:61615726..61616026 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A04	chromosome	Ghir_A04:83578605..83578905 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A04	chromosome	A04:86272722..86273022 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A04	chromosome	A04:79534322..79534622 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
Gbar_A04	chromosome	Gbar_A04:79980972..79981275 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
A04	chromosome	A04:80422072..80422375 +	Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1	n/a
CM017613.1	chromosome	CM017613.1:81985656..81985958 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017639.1	chromosome	CM017639.1:90578955..90579258 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
CM017691.1	chromosome	CM017691.1:80554118..80554421 +	Gossypium darwinii (AD5) genome HGS_v1.1	n/a
A04	chromosome	A04:87648488..87648788 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
A04	chromosome	NAU_RAD_A04_50925942:1..301 . A04:61615726..61616026 +		n/a

Publications


Year	Publication
2015	Wang Y, Ning Z, Hu Y, Chen J, Zhao R, Chen H, Ai N, Guo W, Zhang T. Molecular mapping of restriction-site associated DNA markers in allotetraploid upland cotton. PloS one. 2015; 10(4):e0124781.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prema x 86-1, RIL (2015)	AD_ch04_At.04	N/A	10.48	A04_50925942	View

Sequence

>NAU_RAD_A04_50925942 ID=NAU_RAD_A04_50925942; Name=NAU_RAD_A04_50925942; organism=Gossypium hirsutum; type=genetic_marker; length=301bp
GAGTAGACCTTTCCATGTGGTGGGTCAGCTGGCTTGACCCGAAGGCTCGC
TAAAATGTGGGAGAGTTTGGACAAAAATATAGGCTCGAAAAATGAGTTTA
GACAAAAAAATAAGGTTTATTTTAAAAACGGGTCAGGCCTCGAGTAAGGC
ATTTTTGGCCCAGCTCAGTTCGGCTCGGCTTGGCTCGAATTCACTAAAAG
ACAAAAAAATTTACTTTTTTAATATTATTTTCTTGTTGTTTTCTCCCTAT
TTTGCTATCATTTTACTATGATGTTGCTACTATTTTGTTATTATTTGAAT
A

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NAU_RAD_A04_50925942, NAU_RAD_A04_50925942 (genetic_marker) Gossypium hirsutum