NAU_RAD_A02_6749443, NAU_RAD_A02_6749443 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_RAD_A02_6749443
Genbank IDN/A
TypeRAD
SpeciesGossypium hirsutum
Restriction EnzymeEcoR-I; Bfa-I
Publication[view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_1981supercontigscaffold_1981:4902..5200 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D02chromosomeD02:6610375..6610674 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A02chromosomeA02:6441632..6441932 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:6025986..6026285 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018203.1chromosomeCM018203.1:6052461..6052761 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:57787641..57787939 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:6683370..6683670 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:59186423..59186722 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:145293383..145293682 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold643.1supercontigscaffold643.1:486433..486732 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1591.1supercontigscaffold1591.1:404262..404562 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:6511771..6512070 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A02chromosomeA02:6041244..6041544 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:6369040..6369339 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A02chromosomeGhir_A02:6075168..6075468 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:6099176..6099475 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:5854659..5854959 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:6388085..6388384 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:6315614..6315914 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:6327886..6328185 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A02chromosomeA02:6193931..6194231 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:6531718..6532017 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A02chromosomeGbar_A02:6002163..6002463 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:6122248..6122547 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A02chromosomeA02:5989537..5989837 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:6760591..6760890 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017611.1chromosomeCM017611.1:6099814..6100114 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:7046643..7046942 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017637.1chromosomeCM017637.1:6325551..6325851 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:6402919..6403218 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017689.1chromosomeCM017689.1:6130311..6130611 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:6503007..6503306 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A02chromosomeA02:6352484..6352784 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:125064197..125064497 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:123924530..123924830 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:5722435..5722734 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:6439102..6439401 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:4730235..4730534 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:5044007..5044306 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:4818234..4818533 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:5239730..5240028 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr03chromosomeChr03:196606547..196606846 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
D02chromosomeNAU_RAD_A02_6749443:1..301 .
D02:6511771..6512070 -		n/a
A02chromosomeNAU_RAD_A02_6749443:1..301 .
A02:6041244..6041544 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prema x 86-1, RIL (2015)AD_ch02_At.02N/A3.21A02_6749443View
Sequence
>NAU_RAD_A02_6749443 ID=NAU_RAD_A02_6749443; Name=NAU_RAD_A02_6749443; organism=Gossypium hirsutum; type=genetic_marker; length=301bp
TAAATAATTTTGTGCTTACGAATTCCAATCTGTATCAAAGAAGATTACGG
ACGAATGCAATTTGCCTCAAGTGTGGTGAGGACTTTAAAACTAATATACA
TGCAAGTTGTGATTGTCTACTTGCCTTGCAGGTTTCGCAAGAACTTGGAA
TTAATTGGAGGGTGAACCAAAAAAAGGACTGTATGGCTAATTGAGTTCGA
CAATTATTTTTTTGGGAGTGGTAACAAACAAAAATTAATAGTCATAATCA
CAATCTGGGCAATTTGGCTTTCAAGAAATAAACTAGTGTATGAAGGAAAG
C