NAU_RAD_A02_62350485, NAU_RAD_A02_62350485 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_RAD_A02_62350485
Genbank IDN/A
TypeRAD
SpeciesGossypium hirsutum
Restriction EnzymeEcoR-I; Bfa-I
Publication[view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:89477779..89478079 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:984111..984411 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:98952599..98952899 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:915734..916034 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:878367..878667 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:40446343..40446642 -Gossypioides kirkii genome ISU_v3n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:1020039..1020339 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:834118..834418 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:982381..982681 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:16806193..16806493 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:82487242..82487542 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:948890..949190 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:107132711..107133011 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:944821..945121 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:107338412..107338712 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:929862..930162 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:104793148..104793448 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:942754..943054 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:103370653..103370953 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:947300..947600 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:99267459..99267759 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:908390..908690 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:101200567..101200867 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:916373..916673 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:104172710..104173010 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:910631..910931 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:108931430..108931730 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:972481..972781 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:101350823..101351123 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:937884..938184 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:107253103..107253403 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:987489..987789 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:91970027..91970327 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:101583127..101583427 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:888594..888894 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:72976117..72976417 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:891376..891676 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:963350..963650 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:775756..776056 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:897416..897716 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:776835..777135 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:701204..701504 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03_6346176chromosomeChr03_6346176:2712..3012 +Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:679294..679594 -Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:856665..856965 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr02chromosomeChr02:138677121..138677421 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
A02chromosomeNAU_RAD_A02_62350485:1..301 .
A02:82487242..82487542 +		n/a
D03chromosomeNAU_RAD_A02_62350485:1..301 .
D03:948890..949190 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prema x 86-1, RIL (2015)AD_ch02_At.02N/A81.06A02_62350485View
Sequence
>NAU_RAD_A02_62350485 ID=NAU_RAD_A02_62350485; Name=NAU_RAD_A02_62350485; organism=Gossypium hirsutum; type=genetic_marker; length=301bp
CCACATTCATTCGATTTCACTATTTGGTCCCATTGGTTAACCGCAGGTTG
ATGACACGGTTCATGCTGAATCAAACCGAGTACACCTTAGACAGCTTCTT
GAGCAAGCTAACATGTCCGTTGCTGTTGCTGTGGGGTGACTTAGATCCTT
GGGTCGGTCCAGCAAAGGCTAATCGGATCAAAGAATTCTACCCGAACACA
ACACTCGTAAACCTAAAGGCGGGACACTGTCCGCACGATGAAGTCCCAGA
ACTTGCGAATAAGGCTTTGGTGGATTGGTTATCCACTATAGCAACAAAAG
C