NAU_RAD_A02_59925537, NAU_RAD_A02_59925537 (genetic_marker) Gossypium hirsutum

Marker Overview


Name	NAU_RAD_A02_59925537
Genbank ID	N/A
Type	RAD
Species	Gossypium hirsutum
Restriction Enzyme	EcoR-I; Bfa-I
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
A02	chromosome	A02:86816271..86816571 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1	n/a
Chr02_CRI-A2_v1.0.a1	chromosome	Chr02_CRI-A2_v1.0.a1:3061846..3062146 -	Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1	n/a
At_chr3	chromosome	At_chr3:26509444..26509744 -	Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1	n/a
A02	chromosome	A02:80188081..80188381 +	Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1	n/a
Ghir_A02	chromosome	Ghir_A02:104619930..104620230 +	Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1	n/a
A02	chromosome	A02:104883930..104884230 +	Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1	n/a
A02	chromosome	A02:102243376..102243676 +	Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1	n/a
A02	chromosome	A02:100861764..100862064 +	Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1	n/a
CM017611.1	chromosome	CM017611.1:101491816..101492116 +	Gossypium tomentosum (AD3) genome HGS_v1.1	n/a
CM017637.1	chromosome	CM017637.1:106319813..106320113 +	Gossypium mustelinum (AD4) genome JGI_v1.1	n/a
A02	chromosome	A02:104722095..104722395 +	Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1	n/a
Chr02	chromosome	Chr02:89077212..89077512 +	Gossypium herbaceum (A1) 'Mutema' genome WHU_v1	n/a
Chr02	chromosome	Chr02:98659369..98659669 +	Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1	n/a
A02	chromosome	NAU_RAD_A02_59925537:1..301 . A02:80188081..80188381 +		n/a

Publications


Year	Publication
2015	Wang Y, Ning Z, Hu Y, Chen J, Zhao R, Chen H, Ai N, Guo W, Zhang T. Molecular mapping of restriction-site associated DNA markers in allotetraploid upland cotton. PloS one. 2015; 10(4):e0124781.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Prema x 86-1, RIL (2015)	AD_ch02_At.02	N/A	68.31	A02_59925537	View

Sequence

>NAU_RAD_A02_59925537 ID=NAU_RAD_A02_59925537; Name=NAU_RAD_A02_59925537; organism=Gossypium hirsutum; type=genetic_marker; length=301bp
CTTTTGAGGGAGTATTCCTTGTTTGGTTTCTCATTTTGACACTTTTCTTT
TACATTTTTTTCTCTCTGGCCGAATATTCTTGGTTCGTAACAATATAAAT
TGCACTTTGGTCAATTGCTAGAAGCTAAGTGCTTCTTTGTACCTTTTGGG
TTTTCTCGGGTAACAAAGTTTCTATCTCTTTACTTTGGTAGGCCGAATTC
ACCTTTTCTCTCCCTCACTATTCTGTCCATCGGTTTTCCCTCCTAGCTGA
ACCTCTCTTTTCTCTCTTCTTCATCTCCTCATGTTGTTGTGGCTTGATGA
C

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NAU_RAD_A02_59925537, NAU_RAD_A02_59925537 (genetic_marker) Gossypium hirsutum