NAU_RAD_A05_59528865, NAU_RAD_A05_59528865 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_RAD_A05_59528865
Genbank IDN/A
TypeRAD
SpeciesGossypium hirsutum
Restriction EnzymeEcoR-I; Bfa-I
Publication[view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A05chromosomeA05:22427028..22427328 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:19491754..19492044 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:21490003..21490303 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:18259036..18259335 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:16455382..16455673 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:21973287..21973587 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:42053001..42053299 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:90510662..90510961 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:39207586..39207886 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:19811685..19811985 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:21387415..21387715 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:22055076..22055376 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:22219778..22220078 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:19854521..19854811 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:21158830..21159130 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:19861526..19861816 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:21852623..21852923 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:21635815..21636115 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:20119384..20119674 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:21990305..21990605 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:19797176..19797466 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:21381910..21382210 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:22375493..22375793 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:23478994..23479294 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:21885701..21886001 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:18337056..18337355 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:64468721..64469021 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:18952677..18952976 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:16998866..16999163 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:15815553..15815851 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:19533183..19533475 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:16070652..16070950 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09_3472230chromosomeChr09_3472230:2997..3299 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:16336505..16336803 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:23803470..23803767 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:18850100..18850441 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:108881935..108882266 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr03chromosomeChr03:99070678..99070977 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
A05chromosomeNAU_RAD_A05_59528865:1..301 .
A05:19811685..19811985 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prema x 86-1, RIL (2015)AD_ch05_At.05N/A98.14A05_59528865View
Sequence
>NAU_RAD_A05_59528865 ID=NAU_RAD_A05_59528865; Name=NAU_RAD_A05_59528865; organism=Gossypium hirsutum; type=genetic_marker; length=301bp
AGCAAGTAATCAAAGTTAAATCGATCATGTATGGACCACCAGGGCTCATT
TACCTTTTTTACATGTTGAGTGAGAACAGACATAGCTTTCTCAGTGTCCA
CTGTTGTGGTTTCTACAGCAACATATATGGCCACTGCTGCTGCAATCTCA
GATGGCTTGAATTCCAAGAAGTCAATCCCTACATTTAATTCCCCACCAAC
CATTAGATCCCTCTCAAAATTATTACAAGAAAATACTACAGTTGTCTTTC
TGTGTTTCTGCAACTTCGAATAACACAAGAGAGAAAGGGGGGGACCTTTT
A