NAU_RAD_A05_59497729, NAU_RAD_A05_59497729 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_RAD_A05_59497729
Genbank IDN/A
TypeRAD
SpeciesGossypium hirsutum
Restriction EnzymeEcoR-I; Bfa-I
Publication[view all]
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:20677265..20677563 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:20646680..20646978 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:22459002..22459302 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:19515528..19515827 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:21521967..21522267 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:18282204..18282501 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:22005783..22006082 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:42028255..42028555 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:90487435..90487735 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:39175713..39176013 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:47752864..47753163 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:19897293..19897592 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:19842821..19843121 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:19993475..19993774 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:22055835..22056135 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:19527813..19528112 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:21419099..21419399 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:19843716..19844015 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:22087048..22087348 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:19720131..19720430 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:22251752..22252052 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:19878373..19878672 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:21190790..21191090 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:19885570..19885869 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:21884745..21885045 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:19704706..19705005 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:21671338..21671638 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:20143578..20143877 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:22022208..22022508 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:19821034..19821333 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:21413866..21414166 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:20304499..20304798 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:22407467..22407767 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:23511051..23511351 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:21918198..21918498 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:18360277..18360576 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:64444539..64444838 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:18976712..18977012 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09_6452198chromosomechr09_6452198:903..1203 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:15832018..15832318 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:19556507..19556807 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:16095147..16095447 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09_3358639chromosomeChr09_3358639:1153..1453 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:16361711..16362011 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:23827789..23828089 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:18873386..18873692 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:108858630..108858930 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
A05chromosomeNAU_RAD_A05_59497729:1..301 .
A05:19842821..19843121 -		n/a
D05chromosomeNAU_RAD_A05_59497729:2..301 .
D05:19897293..19897592 -		n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Prema x 86-1, RIL (2015)AD_ch05_At.05N/A94.4A05_59497729View
Sequence
>NAU_RAD_A05_59497729 ID=NAU_RAD_A05_59497729; Name=NAU_RAD_A05_59497729; organism=Gossypium hirsutum; type=genetic_marker; length=301bp
TTCCGGTGGAGTATTTCTTCGTGAATTGCAGCTTTGGGTTGTTGTGATTT
CTATGGTTTTGATCACCCTTTTTCTGGTTCTTTCCATCGTCTTCGCTGTT
ATCTTTACACGACGGGGATGAATTAGAAGAATTCTGAGACTTGGAATCCG
CCTTTTGATTCAAACACCAATTACAAACTTCATAAGAGTCGGCTTTTGGA
TACAGATTGCTACAGTATCTGCCAAAACAAACAAACCCAGAAACCATATA
TGATGATATTATTTTTCATAATCCCCCCACGGAAGGGGTATTCAATGAAA
G