TMB2899, TMB2899 (genetic_marker) Gossypium hirsutum

Marker Overview
NameTMB2899
Genbank IDBV679797
TypeSSR
SpeciesGossypium hirsutum
GermplasmTM-1
Source SequenceBV679797.1
Source Typegenomic
Repeat Motif(TA)8
PCR ConditionAnnealing temperature: 55
Primer 1TMB2899_F: GGAGAAGCAAAGGGATCTCA
Primer 2TMB2899_R: TCGGCTATAAAAAGGCAATGA
Product Length249
ContactYu, John Z. (Zhi-Hong)
CommentPrimer data obtained in 2005-10
Contact
NameDetails
Yu, John Z. (Zhi-Hong)
Description:Cotton molecular genetics and genomics including integrative genome mapping and QTL identification from the Gossypium germplasm.
First name:John
Last name:Yu
Title:Research Geneticist
Institution:USDA-ARS
Address:2765 F&B Road, College Station, Texas 77845
Country:United States
Email:zyu@qutun.tamu.edu
Phone:1-979-260-9237
Fax:1-979-260-9333
Keywords:Cotton Molecular Genetics
Last update:6-Sep-2007
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankBV679797
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A08chromosomeA08:118737322..118737570 +
A08chromosomeA08:118752521..118752759 +
CM018209.1chromosomeCM018209.1:113735687..113735928 +
CM018209.1chromosomeCM018209.1:113750868..113751109 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:123755509..123755746 +
At_chr1chromosomeAt_chr1:51959321..51959569 +
At_chr1chromosomeAt_chr1:51974512..51974750 +
A08chromosomeA08:98846832..98847080 +
A08chromosomeA08:98861505..98861743 +
Ghir_A08chromosomeGhir_A08:117252517..117252764 +
Ghir_A08chromosomeGhir_A08:117267711..117267949 +
A08chromosomeA08:119932749..119932997 +
A08chromosomeA08:119947497..119947735 +
A08chromosomeA08:120089043..120089291 +
A08chromosomeA08:120104242..120104480 +
A08chromosomeA08:115825040..115825288 +
A08chromosomeA08:115840239..115840477 +
scaffold5413supercontigscaffold5413:257956..258197 -
scaffold5413supercontigscaffold5413:228874..229115 -
scaffold5413supercontigscaffold5413:225597..225838 -
Gbar_A08chromosomeGbar_A08:114382773..114383014 +
Gbar_A08chromosomeGbar_A08:114397954..114398195 +
A08chromosomeA08:115394412..115394653 +
A08chromosomeA08:115409448..115409690 +
CM017617.1chromosomeCM017617.1:113982604..113982846 +
CM017617.1chromosomeCM017617.1:113997841..113998080 +
CM017643.1chromosomeCM017643.1:123473674..123473917 +
CM017695.1chromosomeCM017695.1:114600138..114600379 +
CM017695.1chromosomeCM017695.1:114615306..114615547 +
A08chromosomeA08:121954427..121954675 +
A08chromosomeA08:121969626..121969864 +
Chr08chromosomeChr08:126288178..126288428 +
Chr08chromosomeChr08:127232754..127233016 +
Chr08chromosomeChr08:127206584..127206824 +
Germplasm
Stock NameType
TM-1accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BV679797.1BV679797.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1AD-genome wide Reference Map (2009)AD_ch08_At.08N/A44TMB2899View
2Emian-22 x 3-79, BC1 (2011)AD_ch08_At.08N/A45.06TMB2899View
3Yumian-1 x T586, RIL (2006)AD_ch08_At.08N/A61.8TMB2899View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A10.7TMB2899View
5Yumian-1 x T586, RIL (2009)AD_ch08_At.08N/A0TMB2899/700yView
Sequence
>TMB2899 ID=TMB2899; Name=TMB2899; organism=Gossypium hirsutum; type=genetic_marker; length=249bp
GGAGAAGCAAAGGGATCTCATCAATGCATTTAGTAAAGTAATTTTTCCTT
TTTTTTTCCTTTTTAAAAAAACTAAAAAAAACCAGGTATATGCGAAAAAA
AAATATATATATATATATAGATATGTATATATTGAAGACGAAAGAGAAAA
AAAAATTGAATCACCTTCTGATTTCTTTGATTTCTGGTATTGGAATTTTG
TAGTGTGCGTAAATTTTGCATGTACATATCATTGCCTTTTTATAGCCGA