NBRI_gPB_87, NBRI_gPB_87 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gPB_87
Genbank IDHQ524616
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(AA)5
PCR ConditionAnnealing temperature: 51
Primer 1NBRI_gPB_87_F: TCATTACACTCCTGGTTCATT
Primer 2NBRI_gPB_87_R: CCTTCAAAGGTAAGCACTTC
Product Length144
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524616
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A06chromosomeA06:98160138..98160281 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:95635088..95635231 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:93312073..93312216 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr10chromosomeAt_chr10:38789496..38789639 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:83697941..83698084 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:102694998..102695141 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:105613270..105613413 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:104385002..104385145 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:100153064..100153207 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At06chromosomeAt06:79370415..79370558 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1482supercontigscaffold1482:402703..402846 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:94684495..94684638 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:97858062..97858205 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:100525729..100525872 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:105061753..105061896 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:99156214..99156357 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:106484024..106484167 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:99982097..99982240 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:96862806..96862949 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gPB_87 ID=NBRI_gPB_87; Name=NBRI_gPB_87; organism=Gossypium herbaceum; type=genetic_marker; length=144bp
TCATTACACTCCTGGTTCATTTTTGCTGCTATTACAATCCCGAGACCTTC
AGAACCTATGATTCGATTAAGGATACAAACTCAACAACTGAAACGATTTA
TAAAAAAAAAATCCAAAATTCAACGAAGTGCTTACCTTTGAAGG