NBRI_gK034, NBRI_gK034 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gK034
Genbank IDHQ524543
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(TCT)7
PCR ConditionAnnealing temperature: 53
Primer 1NBRI_gK034_F: GTGCCGTGGAAGCGTAGT
Primer 2NBRI_gK034_R: CCTGGGCAGTAGGAGAAGAA
Product Length151
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524543
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:98424735..98424887 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:94040279..94040431 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:102439564..102439713 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold829.1supercontigscaffold829.1:442557..442709 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold17575supercontigscaffold17575:1315..1467 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:79525930..79526082 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:97718191..97718342 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:101028048..101028200 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:100524666..100524818 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Dt10chromosomeDt10:2383437..2383566 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold27756supercontigscaffold27756:1736..1865 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2195supercontigscaffold2195:80540..80692 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:2409050..2409179 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:94711416..94711568 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:95993358..95993510 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:94173878..94174030 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:10939806..10940007 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:103670914..103671081 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:94927200..94927352 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:102332802..102332954 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:106149521..106149679 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:106598471..106598620 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:33264437..33264597 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:76909930..76910083 +Gossypium anomalum (B1) genome NSF_v1n/a
B_02chromosomeB_02:22982480..22982661 +Gossypium anomalum (B1) genome NSF_v1n/a
B_08chromosomeB_08:78874226..78874443 -Gossypium anomalum (B1) genome NSF_v1n/a
F08chromosomeF08:82139904..82140074 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Vagadaccession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch05_At.05N/A100.2NBRI0124View
Sequence
>NBRI_gK034 ID=NBRI_gK034; Name=NBRI_gK034; organism=Gossypium herbaceum; type=genetic_marker; length=151bp
GTGCCGTGGAAGCGTAGTCGTCTTTGAGTTCTTGGATTTTGACCYMTTGS
AAATAGCTGATACAAAGTTCCTTCCATTTTCTCTTCTTCTTCTTCTTCTT
CTTTGTTTCTTCTTTTATTCTTCTTTTTCTCTTCTTCTCCTACTGCCCAG
G