NBRI_gJ036, NBRI_gJ036 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gJ036
Genbank IDHQ524519
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(TTC)10
PCR ConditionAnnealing temperature: 50
Primer 1NBRI_gJ036_F: CCTTTTGTGGGGTGGAAATA
Primer 2NBRI_gJ036_R: TTGAAGGAATTTAAAACAAGAGGAA
Product Length154
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524519
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:57345597..57345760 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:96238801..96238960 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:53876849..53877015 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:93094848..93095004 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:5812024..5812172 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:6659253..6659412 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:48898082..48898236 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:8267833..8267984 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:49453188..49453372 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:53853418..53853581 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:81628469..81628628 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:56286010..56286173 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:100882845..100883004 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:55582691..55582854 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:101182730..101182889 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:56365354..56365538 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:99035507..99035666 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:54535894..54536057 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:95950354..95950513 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:57272267..57272430 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9823supercontigscaffold9823:155361..155524 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3048supercontigscaffold3048:5460..5616 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:52887734..52887897 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:95838473..95838629 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:54677627..54677790 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:95073699..95073855 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:54609014..54609180 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:96255178..96255334 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:57512035..57512204 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:99902362..99902515 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:55197662..55197825 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:95436319..95436475 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:56723114..56723277 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:102563446..102563605 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:103678021..103678165 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:110613339..110613498 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:51927504..51927652 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:81920833..81920978 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:52252213..52252361 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:38646870..38647033 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:53877398..53877549 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:29259938..29260080 +Gossypium gossypioides (D6) genome ISU_v1n/a
E12chromosomeE12:107184233..107184393 +Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:85557815..85557969 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:164640126..164640268 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr08chromosomeNBRI_gJ036:1..154 .
Chr08:51346223..51346371 +		n/a
Chr8chromosomeNBRI_gJ036:1..154 .
Chr8:12534848..12534996 -		n/a
Germplasm
Stock NameType
Vagadaccession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch26_Dt.12N/A80.9NBRI0106View
Sequence
>NBRI_gJ036 ID=NBRI_gJ036; Name=NBRI_gJ036; organism=Gossypium herbaceum; type=genetic_marker; length=154bp
CCTTTTGTGGGGTGGAAATAACTGTGTCATTTTTAGAGACTGTCTCTCCT
TTCTTCTCTTCCTCCTTCAATCGCCATTCCTTTCGCTGCACTTCATCTCC
CTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTGTTTTAAATTCCT
TCAA