NBRI_gB115, NBRI_gB115 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gB115
Genbank IDHQ524353
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(TC)11
PCR ConditionAnnealing temperature: 53
Primer 1NBRI_gB115_F: CCTTGGTTAGGTTACACATCTG
Primer 2NBRI_gB115_R: GTCTTGAAGCAGGTGAGACTC
Product Length228
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524353
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:26142253..26142479 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:35020904..35021135 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:33347809..33348070 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:88431727..88431966 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr7chromosomeDt_chr7:26470921..26471147 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:69404198..69404429 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:24916119..24916345 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:33647410..33647641 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:24956606..24956832 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:33421500..33421731 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:25644628..25644854 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:34007752..34007983 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:25395657..25395883 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:34603226..34603457 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7521supercontigscaffold7521:35197..35456 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:33193281..33193538 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:33264901..33265160 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:34001137..34001386 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:35431451..35431694 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:33708294..33708547 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:25981560..25981786 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:34869339..34869570 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:35247766..35248000 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_11chromosomeB_11:31273412..31273634 +Gossypium anomalum (B1) genome NSF_v1n/a
F11chromosomeF11:28178281..28178506 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gB115 ID=NBRI_gB115; Name=NBRI_gB115; organism=Gossypium herbaceum; type=genetic_marker; length=228bp
CCTTGGTTAGGTTACACATCTGTTAAAACAACAAAAAGAATCTTCCCNTT
TTGTGAACGATGTGATTTACGTGTCTCCAGACCAACAAAATATAAAGCCA
GAAATAAAAAAAAGAAAAAGAAAGAAACTTTACAAGATAAAGATAGAACC
ACTCAAAGATAAGATGAACTATGCAATGTTTTCATCTCTCTCTCTCTCTC
TCTCTCAGAGTCTCACCTGCTTCAAGAC