NBRI_gB004, NBRI_gB004 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_gB004
Genbank IDHQ524338
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source Typegenomic
Repeat Motif(AG)13
PCR ConditionAnnealing temperature: 51
Primer 1NBRI_gB004_F: TTCGGTAAGGGAGTAGTGAAT
Primer 2NBRI_gB004_R: GGGGAGAGATTTTAGGAGTG
Product Length154
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ524338
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:31419305..31419469 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:39565230..39565386 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At01chromosomeAt01:35761860..35762024 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At01chromosomeAt01:35754547..35754696 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11184supercontigscaffold11184:103692..103856 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11184supercontigscaffold11184:96379..96528 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:31710550..31710714 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:31703237..31703386 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:31616861..31617025 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:32995228..32995401 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:33155544..33155769 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:33148217..33148380 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:31660035..31660208 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:31652717..31652872 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr01chromosomeChr01:66975223..66975378 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:66982532..66982693 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:39625517..39625674 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Vagadaccession
Sequence
>NBRI_gB004 ID=NBRI_gB004; Name=NBRI_gB004; organism=Gossypium herbaceum; type=genetic_marker; length=154bp
TTCGGTAAGGGAGTAGTGAATTGACCTTAGAAGAGAGAGAGAGAGAGAGA
GAGAGAGAAGAATTTGGGGATTTCAAAATACAAAATAGAAAATAAGAAAA
TAGATTTTTGGATGATTTCCCACATCCCCTAATTCACTCCTAAAATCTCT
CCCC