NBRI_e0737, NBRI_e0737 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_e0737
Genbank IDHQ525585
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source TypeEST
Repeat Motif(A)15
PCR ConditionAnnealing temperature: 57
Primer 1NBRI_e0737_F: CACAAGGCCTACCCAAGAAA
Primer 2NBRI_e0737_R: TTGATACCTCAAAATACCCAAGC
Product Length204
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ525585
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:3297192..3297389 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:4026675..4026874 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:3115203..3115407 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:3648494..3648692 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:2736748..2736949 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:9237039..9237236 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016618.1chromosomeCM016618.1:93073827..93074022 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:37463577..37463777 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:53844900..53845097 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3415_A13supercontigscaffold3415_A13:77444..77643 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:3175880..3176077 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:3116065..3116262 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:3615112..3615311 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:2995172..2995369 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:3682213..3682412 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:3124661..3124857 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:3511886..3512086 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:3153436..3153633 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:3602803..3603003 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold50465supercontigscaffold50465:214..417 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold50465supercontigscaffold50465:5534..5732 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10995supercontigscaffold10995:34077..34275 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:2864342..2864544 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:3690710..3690908 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:2930235..2930439 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:3582240..3582439 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:2968857..2969058 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:3793699..3793946 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:3140860..3141061 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:3724090..3724289 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:3019171..3019378 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:3465101..3465300 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:3232438..3232635 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:3871839..3872038 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:3688652..3688855 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:9414894..9415092 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:2757473..2757673 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:91468879..91469085 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:2915323..2915519 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13_6454579chromosomechr13_6454579:4217..4435 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:3182257..3182460 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:3108239..3108435 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:3130918..3131175 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:2199508..2199704 +Gossypium gossypioides (D6) genome ISU_v1n/a
E13chromosomeE13:4235705..4236281 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr05chromosomeChr05:111648117..111648321 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeNBRI_e0737:1..299 .
Chr13:2699625..2699920 +		n/a
Chr13chromosomeNBRI_e0737:1..299 .
Chr13:40409408..40409703 -		n/a
Germplasm
Stock NameType
Vagadaccession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch18_Dt.13N/A21.4NBRI0978View
2Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A8NBRI0978View
Sequence
>NBRI_e0737 ID=NBRI_e0737; Name=NBRI_e0737; organism=Gossypium herbaceum; type=genetic_marker; length=204bp
CACAAGGCCTACCCAAGAAACCAAAGATTTGGCCAACTAAGTTCTAAAGG
ATATGGATTTGAACGCACTTATGCGCGTAATACTTCAATTTAGTTAGTTT
GGGGTTTGCAGGATTTATGGGCAGTTAAGGAAATGTAAGAAAAAAAAAAA
AAAACCAAAGATTTGAAGATTTCGATATCTAGCTTGGGTATTTTGAGGTA
TCAA