NAU5480, NAU5480 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5480
Genbank IDDR459076
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDR459076.1
Source TypeEST
Repeat Motif(tga)9
PCR ConditionAnnealing temperature: 57
Primer 1NAU5480_F: TTAATGGGGTAAACGCAAAT
Primer 2NAU5480_R: CTGGTCCTCAACCTTAGCAT
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR459076
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:61340395..61340846 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:102011031..102011495 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:58645604..58646054 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:101846571..101847028 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:10126900..10127353 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:57660402..57660861 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:127872034..127872481 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:48771086..48771537 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:56527899..56528350 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:81825090..81825554 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:61226432..61226883 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:110910822..110911286 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:60506985..60507436 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:109536956..109537420 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:61197808..61198259 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:106974094..106974558 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:58472426..58472877 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:86084603..86085060 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold200supercontigscaffold200:69009..69466 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17848supercontigscaffold17848:38336..38786 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:58094544..58094993 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:100267760..100268217 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:61089628..61090079 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:103505790..103506247 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:60530912..60531369 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:62050776..62051229 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:58151843..58152294 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:102389496..102389953 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:61023135..61023586 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:111719289..111719753 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:8432588..8433042 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:87440924..87441390 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:58177733..58178186 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:59095189..59095636 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:35448206..35448688 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:31200295..31200730 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:37948064..37948578 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr11chromosomeChr11:16991219..16991626 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR459076.1DR459076.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch11_At.11N/A60.84NAU5480View
2AD-genome wide Reference Map (2009)AD_ch11_At.11N/A43NAU5480View
3Prema x 86-1, RIL (2015)AD_ch11_At.11N/A1.7NAU5480View
4GX1135 x VGX100-2, RIL (2016)AD_ch25_Dt.06N/A49.4NAU5480View
5SG 747 x Giza 75, BIL (2013)AD_ch11_At.11N/A0NAU5480View
6TM-1 x Hai-7124, BC1 (2007)AD_ch11_At.11N/A60.8NAU5480-155View
7TM-1 x Hai-7124, BC1 (2008)AD_ch11_At.11N/A61.02NAU5480-155View
8TM-1 x Hai-7124, BC1 (2012)AD_ch11_At.11N/A100.7NAU5480-155View
Sequence
>NAU5480 ID=NAU5480; Name=NAU5480; organism=Gossypium hirsutum; type=genetic_marker; length=167bp
TTAATGGGGTAAACGCAAATGCAAGTAGGTTGGACTCTAATTTAGTTGAT
GAAAATGATAAGACTAGTGTTGATGATGATGATGATGATGATGATGATGG
ATGGGAATTCAAGGCTGCAGAGCCCGAGACTCGCTTCACAACCGGTGATG
CTAAGGTTGAGGACCAG