NAU5329, NAU5329 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5329
Genbank IDDR459430
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDR459430.1
Source TypeEST
Repeat Motif(ac)11
PCR ConditionAnnealing temperature: 57
Primer 1NAU5329_F: TTTAAGCTGCAATTCGAAAG
Primer 2NAU5329_R: TGATCCGATCCATTTCTTTT
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR459430
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:63716355..63716512 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:60835950..60836109 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:86894244..86894405 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:25156145..25156298 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:67986852..67987010 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr1chromosomeAt_chr1:87043170..87043327 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:56902931..56903088 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:26320885..26321027 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:65932770..65932927 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:63559648..63559805 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:64091517..64091674 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:62397245..62397402 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:61199509..61199668 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6468supercontigscaffold6468:3188..3329 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18046supercontigscaffold18046:6965..7124 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:25820417..25820557 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:60628813..60628970 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:61187883..61188040 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:25742951..25743095 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:63781573..63781727 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:26139918..26140063 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:66832881..66833031 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:61357103..61357260 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:65666207..65666364 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:36669812..36669969 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:36058964..36059125 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:32473050..32473206 +Gossypium anomalum (B1) genome NSF_v1n/a
chr07chromosomechr07:21326557..21326817 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr07chromosomeChr07:16660309..16660568 +Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:36687581..36687723 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr07chromosomeNAU5329:1..598 .
Chr07:24850031..24850611 +
n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR459430.1DR459430.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1JLZM x ZJXSLS, F2 (2008)A_JZ_A13N/A106.4NAU5329View
Sequence
>NAU5329 ID=NAU5329; Name=NAU5329; organism=Gossypium hirsutum; type=genetic_marker; length=158bp
TTTAAGCTGCAATTCGAAAGCCCCCAGGGGAAAAAAAAAAACACACACAC
ACACACACACACATCCAAAGAACCCAAGTCCTTCCCTATTGCATGCCTTT
CAATTTGATTTCATGGATGTAACAAGCACACCAAATAGAAAAGAAATGGA
TCGGATCA