NAU5323, NAU5323 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU5323
Genbank IDDR457031
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Xuzhou 142
Source SequenceDR457031.1
Source TypeEST
Repeat Motif(aagatg)3
PCR ConditionAnnealing temperature: 57
Primer 1NAU5323_F: ACCCTGGGACTCAAACTGTA
Primer 2NAU5323_R: ATCCCATCATGAAAAGCAGT
Restriction EnzymeEcoRI; XhoI
Publication[view all]
ContactZhang, Tian-Zhen
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Tian-Zhen
First name:Tian-Zhen
Last name:Zhang
Title:Professor
Institution:Zhejiang University
Address:College of Agriculture and Biotechnology, Zhejiang University, Hangzhou , 310058 , Zhejiang , China
Country:China
Email:cotton@zju.edu.cn
Phone:+86 571 88982971
Fax:+86 571 88982971
Keywords:cotton genetics and genomics, and breeding
Last update:18-Mar-2022
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDR457031
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:108882327..108882546 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:106979236..106979461 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:63650202..63650421 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:2581873..2582092 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:1967923..1968142 -Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:3438298..3438517 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:2646071..2646290 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:141146530..141146749 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1227.1supercontigscaffold1227.1:15637..15856 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:61418643..61418862 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:97861406..97861625 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:65082366..65082585 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:111734181..111734400 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:64323227..64323446 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:112187776..112187995 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:63346851..63347070 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:111842889..111843108 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:61648358..61648577 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:106274350..106274569 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:103890436..103890661 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11599supercontigscaffold11599:83714..83939 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5969supercontigscaffold5969:209179..209398 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:62671752..62671971 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:107264178..107264403 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:63473757..63473976 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:108642459..108642684 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:63621504..63621723 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:107949638..107949857 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:64778145..64778364 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:115677065..115677284 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:64353321..64353540 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:110231414..110231639 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:115023261..115023480 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:66699955..66700174 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:124835180..124835399 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:120792672..120792891 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:59476973..59477192 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:3817165..3817384 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:61655340..61655559 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:50364510..50364729 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:41883834..41884053 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:63085857..63086076 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:46949910..46950129 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:34281466..34281685 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:45757141..45757360 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:4145558..4145777 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:92051415..92051634 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:598752..598971 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DR457031.1DR457031.1Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch10_At.10N/A0NAU5323View
2Yumian-1 x T586, RIL (2015)AD_ch10_At.10N/A104.7NAU5323View
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch10_At.10N/A17.2NAU5323View
40-153 x sGK9708, RIL (2016)AD_ch10_At.10N/A0NAU5323View
5TM-1 x Hai-7124, BC1 (2008)AD_ch10_At.10N/A111.1NAU5323-630View
6TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A17.4NAU5323-630View
Sequence
>NAU5323 ID=NAU5323; Name=NAU5323; organism=Gossypium hirsutum; type=genetic_marker; length=226bp
ACCCTGGGACTCAAACTGTAACATTGAAAAGAGAATATAATGGTGAGCTC
ATAAAAGTTGATGTTCACATGCTTGATCTTAACGAAGAAGAGCAAGATGA
AGATGAAGATGAAGTTGAAGACAAGGATGGGGATAATACCAATGCTAGAA
TCCCGTTCGTTGTCACCGTTTCGAAGAAAGATGGTCCGAGTTTGGAGTTC
AGTTGCACTGCTTTTCATGATGGGAT